Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CKS1BP61024 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CKS1BP61024 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CKS1BP61024 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CKS1BP61024 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
CKS1BP61024 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CKS1BP61024 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC18.62■□□□□ 0.57
CKS1BP61024 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CKS1BP61024 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC18.62■□□□□ 0.57
CKS1BP61024 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CKS1BP61024 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CKS1BP61024 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CKS1BP61024 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CKS1BP61024 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CKS1BP61024 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC18.6■□□□□ 0.57
CKS1BP61024 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CKS1BP61024 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CKS1BP61024 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CKS1BP61024 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CKS1BP61024 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CKS1BP61024 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CKS1BP61024 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CKS1BP61024 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.56■□□□□ 0.56
CKS1BP61024 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CKS1BP61024 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC18.56■□□□□ 0.56
CKS1BP61024 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC18.55■□□□□ 0.56
CKS1BP61024 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CKS1BP61024 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CKS1BP61024 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CKS1BP61024 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CKS1BP61024 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CKS1BP61024 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CKS1BP61024 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CKS1BP61024 SHF-206ENST00000560471 2499 ntTSL 5 BASIC18.5■□□□□ 0.55
CKS1BP61024 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CKS1BP61024 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.49■□□□□ 0.55
CKS1BP61024 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CKS1BP61024 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC18.49■□□□□ 0.55
CKS1BP61024 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CKS1BP61024 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC18.48■□□□□ 0.55
CKS1BP61024 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CKS1BP61024 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.47■□□□□ 0.55
CKS1BP61024 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.47■□□□□ 0.55
CKS1BP61024 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC18.46■□□□□ 0.55
CKS1BP61024 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CKS1BP61024 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CKS1BP61024 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CKS1BP61024 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CKS1BP61024 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CKS1BP61024 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CKS1BP61024 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CKS1BP61024 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CKS1BP61024 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS1BP61024 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CKS1BP61024 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS1BP61024 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CKS1BP61024 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CKS1BP61024 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CKS1BP61024 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CKS1BP61024 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CKS1BP61024 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CKS1BP61024 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC18.42■□□□□ 0.54
CKS1BP61024 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CKS1BP61024 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC18.41■□□□□ 0.54
CKS1BP61024 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CKS1BP61024 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CKS1BP61024 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CKS1BP61024 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CKS1BP61024 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.39■□□□□ 0.53
CKS1BP61024 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CKS1BP61024 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CKS1BP61024 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CKS1BP61024 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS1BP61024 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC18.37■□□□□ 0.53
CKS1BP61024 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CKS1BP61024 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CKS1BP61024 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CKS1BP61024 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC18.36■□□□□ 0.53
CKS1BP61024 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CKS1BP61024 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CKS1BP61024 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC18.35■□□□□ 0.53
CKS1BP61024 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CKS1BP61024 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CKS1BP61024 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CKS1BP61024 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC18.34■□□□□ 0.53
CKS1BP61024 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CKS1BP61024 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CKS1BP61024 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CKS1BP61024 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CKS1BP61024 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CKS1BP61024 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC18.33■□□□□ 0.52
CKS1BP61024 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC18.32■□□□□ 0.52
CKS1BP61024 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CKS1BP61024 AC120057.4-201ENST00000624722 1615 ntBASIC18.31■□□□□ 0.52
CKS1BP61024 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CKS1BP61024 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CKS1BP61024 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CKS1BP61024 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CKS1BP61024 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CKS1BP61024 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms