Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 HGH1-207ENST00000628266 258 ntTSL 5 BASIC27.82■■■□□ 2.04
CXCL12P48061 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
CXCL12P48061 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
CXCL12P48061 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CXCL12P48061 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.79■■■□□ 2.04
CXCL12P48061 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC27.78■■■□□ 2.04
CXCL12P48061 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
CXCL12P48061 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CXCL12P48061 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.76■■■□□ 2.03
CXCL12P48061 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.03
CXCL12P48061 WASH5P-204ENST00000632292 975 ntBASIC27.76■■■□□ 2.03
CXCL12P48061 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CXCL12P48061 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
CXCL12P48061 RPS2-209ENST00000529806 993 ntTSL 3 BASIC27.74■■■□□ 2.03
CXCL12P48061 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
CXCL12P48061 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CXCL12P48061 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC27.73■■■□□ 2.03
CXCL12P48061 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
CXCL12P48061 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
CXCL12P48061 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC27.71■■■□□ 2.03
CXCL12P48061 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
CXCL12P48061 DUX4L29-201ENST00000425409 679 ntBASIC27.7■■■□□ 2.02
CXCL12P48061 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CXCL12P48061 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27.69■■■□□ 2.02
CXCL12P48061 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
CXCL12P48061 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
CXCL12P48061 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC27.67■■■□□ 2.02
CXCL12P48061 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC27.67■■■□□ 2.02
CXCL12P48061 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CXCL12P48061 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
CXCL12P48061 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.02
CXCL12P48061 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
CXCL12P48061 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
CXCL12P48061 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CXCL12P48061 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC27.63■■■□□ 2.01
CXCL12P48061 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC27.62■■■□□ 2.01
CXCL12P48061 RPS2-202ENST00000526522 924 ntTSL 2 BASIC27.62■■■□□ 2.01
CXCL12P48061 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
CXCL12P48061 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
CXCL12P48061 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27.59■■■□□ 2.01
CXCL12P48061 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
CXCL12P48061 MIR4449-201ENST00000578365 66 ntBASIC27.59■■■□□ 2.01
CXCL12P48061 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.59■■■□□ 2.01
CXCL12P48061 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC27.57■■■□□ 2
CXCL12P48061 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC27.57■■■□□ 2
CXCL12P48061 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC27.55■■■□□ 2
CXCL12P48061 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC27.55■■■□□ 2
CXCL12P48061 MIR639-201ENST00000384974 98 ntBASIC27.54■■■□□ 2
CXCL12P48061 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC27.54■■■□□ 2
CXCL12P48061 AC021231.2-201ENST00000594613 730 ntBASIC27.53■■■□□ 2
CXCL12P48061 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
CXCL12P48061 MACF1-219ENST00000484793 834 ntTSL 2 BASIC27.51■■□□□ 1.99
CXCL12P48061 CIB2-204ENST00000557846 934 ntTSL 3 BASIC27.51■■□□□ 1.99
CXCL12P48061 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CXCL12P48061 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CXCL12P48061 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
CXCL12P48061 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CXCL12P48061 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CXCL12P48061 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC27.49■■□□□ 1.99
CXCL12P48061 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC27.49■■□□□ 1.99
CXCL12P48061 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CXCL12P48061 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
CXCL12P48061 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.47■■□□□ 1.99
CXCL12P48061 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.44■■□□□ 1.98
CXCL12P48061 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC27.44■■□□□ 1.98
CXCL12P48061 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
CXCL12P48061 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.41■■□□□ 1.98
CXCL12P48061 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC27.41■■□□□ 1.98
CXCL12P48061 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.41■■□□□ 1.98
CXCL12P48061 AC108673.1-201ENST00000510422 1159 ntBASIC27.4■■□□□ 1.98
CXCL12P48061 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
CXCL12P48061 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
CXCL12P48061 MIR3648-2-201ENST00000581792 180 ntBASIC27.39■■□□□ 1.98
CXCL12P48061 MIR3648-1-201ENST00000615959 180 ntBASIC27.39■■□□□ 1.98
CXCL12P48061 AC016575.1-201ENST00000607026 382 ntBASIC27.38■■□□□ 1.97
CXCL12P48061 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
CXCL12P48061 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
CXCL12P48061 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.37■■□□□ 1.97
CXCL12P48061 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.37■■□□□ 1.97
CXCL12P48061 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
CXCL12P48061 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC27.36■■□□□ 1.97
CXCL12P48061 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CXCL12P48061 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC27.34■■□□□ 1.97
CXCL12P48061 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
CXCL12P48061 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
CXCL12P48061 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.33■■□□□ 1.97
CXCL12P48061 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
CXCL12P48061 MIR6090-201ENST00000622481 60 ntBASIC27.32■■□□□ 1.96
CXCL12P48061 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CXCL12P48061 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
CXCL12P48061 HSD17B1P1-201ENST00000590052 955 ntBASIC27.3■■□□□ 1.96
CXCL12P48061 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.29■■□□□ 1.96
CXCL12P48061 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.29■■□□□ 1.96
CXCL12P48061 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC27.29■■□□□ 1.96
CXCL12P48061 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC27.29■■□□□ 1.96
CXCL12P48061 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CXCL12P48061 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CXCL12P48061 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.27■■□□□ 1.96
CXCL12P48061 DUX4L11-201ENST00000611504 1267 ntBASIC27.27■■□□□ 1.96
CXCL12P48061 DUX4L12-201ENST00000614593 1267 ntBASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 131.7 ms