Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CLCN1P35523 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CLCN1P35523 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CLCN1P35523 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CLCN1P35523 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CLCN1P35523 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
CLCN1P35523 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CLCN1P35523 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.77■■■□□ 2.52
CLCN1P35523 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CLCN1P35523 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
CLCN1P35523 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
CLCN1P35523 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
CLCN1P35523 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
CLCN1P35523 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLCN1P35523 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLCN1P35523 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CLCN1P35523 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLCN1P35523 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
CLCN1P35523 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.5
CLCN1P35523 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CLCN1P35523 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CLCN1P35523 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.67■■■□□ 2.5
CLCN1P35523 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLCN1P35523 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
CLCN1P35523 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CLCN1P35523 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.63■■■□□ 2.49
CLCN1P35523 ZNRF2P1-201ENST00000441407 443 ntBASIC30.63■■■□□ 2.49
CLCN1P35523 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLCN1P35523 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLCN1P35523 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLCN1P35523 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLCN1P35523 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.6■■■□□ 2.49
CLCN1P35523 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.6■■■□□ 2.49
CLCN1P35523 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CLCN1P35523 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CLCN1P35523 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.57■■■□□ 2.48
CLCN1P35523 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
CLCN1P35523 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.56■■■□□ 2.48
CLCN1P35523 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
CLCN1P35523 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
CLCN1P35523 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
CLCN1P35523 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
CLCN1P35523 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
CLCN1P35523 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CLCN1P35523 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
CLCN1P35523 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.5■■■□□ 2.47
CLCN1P35523 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC30.5■■■□□ 2.47
CLCN1P35523 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CLCN1P35523 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
CLCN1P35523 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.5■■■□□ 2.47
CLCN1P35523 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
CLCN1P35523 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC30.48■■■□□ 2.47
CLCN1P35523 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.47■■■□□ 2.47
CLCN1P35523 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.47■■■□□ 2.47
CLCN1P35523 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.47■■■□□ 2.47
CLCN1P35523 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.47■■■□□ 2.47
CLCN1P35523 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CLCN1P35523 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CLCN1P35523 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.45■■■□□ 2.47
CLCN1P35523 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.45■■■□□ 2.47
CLCN1P35523 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CLCN1P35523 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.46
CLCN1P35523 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CLCN1P35523 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CLCN1P35523 SHF-207ENST00000560540 2062 ntTSL 5 BASIC30.44■■■□□ 2.46
CLCN1P35523 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.43■■■□□ 2.46
CLCN1P35523 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CLCN1P35523 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CLCN1P35523 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
CLCN1P35523 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.42■■■□□ 2.46
CLCN1P35523 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CLCN1P35523 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CLCN1P35523 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
CLCN1P35523 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CLCN1P35523 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CLCN1P35523 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CLCN1P35523 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
CLCN1P35523 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.39■■■□□ 2.46
CLCN1P35523 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC30.39■■■□□ 2.46
CLCN1P35523 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.39■■■□□ 2.46
CLCN1P35523 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CLCN1P35523 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.36■■■□□ 2.45
CLCN1P35523 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CLCN1P35523 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC30.35■■■□□ 2.45
CLCN1P35523 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.35■■■□□ 2.45
CLCN1P35523 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.35■■■□□ 2.45
CLCN1P35523 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CLCN1P35523 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.33■■■□□ 2.45
CLCN1P35523 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CLCN1P35523 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.33■■■□□ 2.45
CLCN1P35523 AC142086.6-201ENST00000621154 1765 ntBASIC30.32■■■□□ 2.44
CLCN1P35523 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLCN1P35523 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
CLCN1P35523 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLCN1P35523 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CLCN1P35523 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLCN1P35523 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CLCN1P35523 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.28■■■□□ 2.44
CLCN1P35523 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
CLCN1P35523 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms