Protein–RNA interactions for Protein: P13942

COL11A2, Collagen alpha-2(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,736 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A2P13942 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.36■■■■□ 3.09
COL11A2P13942 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.35■■■■□ 3.09
COL11A2P13942 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
COL11A2P13942 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.35■■■■□ 3.09
COL11A2P13942 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC34.35■■■■□ 3.09
COL11A2P13942 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC34.33■■■■□ 3.09
COL11A2P13942 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC34.33■■■■□ 3.09
COL11A2P13942 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.33■■■■□ 3.09
COL11A2P13942 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC34.31■■■■□ 3.08
COL11A2P13942 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC34.3■■■■□ 3.08
COL11A2P13942 RPS2-202ENST00000526522 924 ntTSL 2 BASIC34.3■■■■□ 3.08
COL11A2P13942 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC34.29■■■■□ 3.08
COL11A2P13942 ZNRF2P2-203ENST00000454624 420 ntBASIC34.29■■■■□ 3.08
COL11A2P13942 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC34.28■■■■□ 3.08
COL11A2P13942 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
COL11A2P13942 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC34.28■■■■□ 3.08
COL11A2P13942 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.28■■■■□ 3.08
COL11A2P13942 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
COL11A2P13942 WASH5P-204ENST00000632292 975 ntBASIC34.27■■■■□ 3.08
COL11A2P13942 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC34.24■■■■□ 3.07
COL11A2P13942 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC34.24■■■■□ 3.07
COL11A2P13942 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
COL11A2P13942 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC34.23■■■■□ 3.07
COL11A2P13942 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.22■■■■□ 3.07
COL11A2P13942 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC34.21■■■■□ 3.07
COL11A2P13942 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC34.19■■■■□ 3.06
COL11A2P13942 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.18■■■■□ 3.06
COL11A2P13942 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
COL11A2P13942 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC34.17■■■■□ 3.06
COL11A2P13942 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.16■■■■□ 3.06
COL11A2P13942 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.16■■■■□ 3.06
COL11A2P13942 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
COL11A2P13942 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
COL11A2P13942 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
COL11A2P13942 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
COL11A2P13942 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
COL11A2P13942 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC34.12■■■■□ 3.05
COL11A2P13942 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
COL11A2P13942 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
COL11A2P13942 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC34.1■■■■□ 3.05
COL11A2P13942 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC34.1■■■■□ 3.05
COL11A2P13942 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.08■■■■□ 3.05
COL11A2P13942 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC34.08■■■■□ 3.05
COL11A2P13942 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
COL11A2P13942 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC34.07■■■■□ 3.04
COL11A2P13942 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
COL11A2P13942 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC34.06■■■■□ 3.04
COL11A2P13942 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC34.04■■■■□ 3.04
COL11A2P13942 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
COL11A2P13942 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
COL11A2P13942 MIR4449-201ENST00000578365 66 ntBASIC34.02■■■■□ 3.04
COL11A2P13942 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
COL11A2P13942 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
COL11A2P13942 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
COL11A2P13942 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
COL11A2P13942 DUX4L29-201ENST00000425409 679 ntBASIC33.96■■■■□ 3.03
COL11A2P13942 MACF1-219ENST00000484793 834 ntTSL 2 BASIC33.96■■■■□ 3.03
COL11A2P13942 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
COL11A2P13942 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC33.96■■■■□ 3.03
COL11A2P13942 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
COL11A2P13942 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC33.93■■■■□ 3.02
COL11A2P13942 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC33.91■■■■□ 3.02
COL11A2P13942 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
COL11A2P13942 AC021231.2-201ENST00000594613 730 ntBASIC33.9■■■■□ 3.02
COL11A2P13942 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC33.89■■■■□ 3.02
COL11A2P13942 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC33.87■■■■□ 3.01
COL11A2P13942 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC33.86■■■■□ 3.01
COL11A2P13942 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
COL11A2P13942 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC33.84■■■■□ 3.01
COL11A2P13942 MIR639-201ENST00000384974 98 ntBASIC33.84■■■■□ 3.01
COL11A2P13942 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
COL11A2P13942 RNF166-209ENST00000567844 633 ntTSL 5 BASIC33.83■■■■□ 3.01
COL11A2P13942 CR559946.2-201ENST00000623684 991 ntBASIC33.83■■■■□ 3.01
COL11A2P13942 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
COL11A2P13942 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
COL11A2P13942 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.81■■■■□ 3
COL11A2P13942 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC33.8■■■■□ 3
COL11A2P13942 AC016575.1-201ENST00000607026 382 ntBASIC33.8■■■■□ 3
COL11A2P13942 GDI1-215ENST00000630693 786 ntTSL 4 BASIC33.8■■■■□ 3
COL11A2P13942 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
COL11A2P13942 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC33.78■■■■□ 3
COL11A2P13942 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC33.77■■■■□ 3
COL11A2P13942 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC33.77■■■■□ 3
COL11A2P13942 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC33.77■■■■□ 3
COL11A2P13942 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC33.77■■■■□ 3
COL11A2P13942 MIR3648-2-201ENST00000581792 180 ntBASIC33.76■■■□□ 2.99
COL11A2P13942 MIR3648-1-201ENST00000615959 180 ntBASIC33.76■■■□□ 2.99
COL11A2P13942 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC33.75■■■□□ 2.99
COL11A2P13942 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC33.74■■■□□ 2.99
COL11A2P13942 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC33.74■■■□□ 2.99
COL11A2P13942 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.73■■■□□ 2.99
COL11A2P13942 HSD17B1P1-201ENST00000590052 955 ntBASIC33.73■■■□□ 2.99
COL11A2P13942 MIR6090-201ENST00000622481 60 ntBASIC33.72■■■□□ 2.99
COL11A2P13942 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL11A2P13942 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC33.71■■■□□ 2.99
COL11A2P13942 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
COL11A2P13942 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC33.7■■■□□ 2.98
COL11A2P13942 CIB2-204ENST00000557846 934 ntTSL 3 BASIC33.69■■■□□ 2.98
COL11A2P13942 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
COL11A2P13942 AC108673.1-201ENST00000510422 1159 ntBASIC33.65■■■□□ 2.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms