Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
CACNA1FO60840 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
CACNA1FO60840 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
CACNA1FO60840 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
CACNA1FO60840 DENR-202ENST00000455982 1052 ntTSL 5 BASIC34.73■■■■□ 3.15
CACNA1FO60840 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
CACNA1FO60840 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC34.73■■■■□ 3.15
CACNA1FO60840 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC34.72■■■■□ 3.15
CACNA1FO60840 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
CACNA1FO60840 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
CACNA1FO60840 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC34.68■■■■□ 3.14
CACNA1FO60840 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
CACNA1FO60840 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
CACNA1FO60840 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC34.67■■■■□ 3.14
CACNA1FO60840 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CACNA1FO60840 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CACNA1FO60840 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
CACNA1FO60840 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC34.62■■■■□ 3.13
CACNA1FO60840 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC34.62■■■■□ 3.13
CACNA1FO60840 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC34.61■■■■□ 3.13
CACNA1FO60840 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC34.6■■■■□ 3.13
CACNA1FO60840 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC34.59■■■■□ 3.13
CACNA1FO60840 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
CACNA1FO60840 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC34.59■■■■□ 3.13
CACNA1FO60840 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC34.57■■■■□ 3.12
CACNA1FO60840 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
CACNA1FO60840 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC34.54■■■■□ 3.12
CACNA1FO60840 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC34.52■■■■□ 3.12
CACNA1FO60840 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC34.51■■■■□ 3.11
CACNA1FO60840 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.11
CACNA1FO60840 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC34.5■■■■□ 3.11
CACNA1FO60840 AL162393.1-201ENST00000437852 946 ntBASIC34.49■■■■□ 3.11
CACNA1FO60840 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC34.49■■■■□ 3.11
CACNA1FO60840 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC34.48■■■■□ 3.11
CACNA1FO60840 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC34.47■■■■□ 3.11
CACNA1FO60840 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC34.47■■■■□ 3.11
CACNA1FO60840 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC34.44■■■■□ 3.1
CACNA1FO60840 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
CACNA1FO60840 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC34.44■■■■□ 3.1
CACNA1FO60840 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC34.43■■■■□ 3.1
CACNA1FO60840 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
CACNA1FO60840 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC34.42■■■■□ 3.1
CACNA1FO60840 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
CACNA1FO60840 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.1
CACNA1FO60840 AC005559.1-201ENST00000589661 871 ntBASIC34.4■■■■□ 3.1
CACNA1FO60840 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC34.39■■■■□ 3.1
CACNA1FO60840 DUX4L28-201ENST00000623687 678 ntBASIC34.38■■■■□ 3.09
CACNA1FO60840 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
CACNA1FO60840 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
CACNA1FO60840 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC34.38■■■■□ 3.09
CACNA1FO60840 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC34.38■■■■□ 3.09
CACNA1FO60840 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC34.37■■■■□ 3.09
CACNA1FO60840 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC34.37■■■■□ 3.09
CACNA1FO60840 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC34.36■■■■□ 3.09
CACNA1FO60840 MIR762-201ENST00000390236 83 ntBASIC34.36■■■■□ 3.09
CACNA1FO60840 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
CACNA1FO60840 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.35■■■■□ 3.09
CACNA1FO60840 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC34.35■■■■□ 3.09
CACNA1FO60840 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
CACNA1FO60840 CHML-205ENST00000638160 705 ntTSL 3 BASIC34.33■■■■□ 3.09
CACNA1FO60840 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC34.32■■■■□ 3.09
CACNA1FO60840 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
CACNA1FO60840 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
CACNA1FO60840 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
CACNA1FO60840 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
CACNA1FO60840 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC34.31■■■■□ 3.08
CACNA1FO60840 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC34.3■■■■□ 3.08
CACNA1FO60840 AP006261.1-201ENST00000584783 668 ntBASIC34.29■■■■□ 3.08
CACNA1FO60840 NRG1-221ENST00000614767 762 ntTSL 5 BASIC34.29■■■■□ 3.08
CACNA1FO60840 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC34.29■■■■□ 3.08
CACNA1FO60840 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC34.29■■■■□ 3.08
CACNA1FO60840 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CACNA1FO60840 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC34.28■■■■□ 3.08
CACNA1FO60840 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC34.28■■■■□ 3.08
CACNA1FO60840 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC34.28■■■■□ 3.08
CACNA1FO60840 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CACNA1FO60840 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CACNA1FO60840 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC34.26■■■■□ 3.08
CACNA1FO60840 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
CACNA1FO60840 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC34.25■■■■□ 3.07
CACNA1FO60840 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC34.24■■■■□ 3.07
CACNA1FO60840 MIR3665-201ENST00000578708 105 ntBASIC34.23■■■■□ 3.07
CACNA1FO60840 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC34.23■■■■□ 3.07
CACNA1FO60840 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC34.23■■■■□ 3.07
CACNA1FO60840 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
CACNA1FO60840 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC34.22■■■■□ 3.07
CACNA1FO60840 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
CACNA1FO60840 RPS2P35-201ENST00000443417 897 ntBASIC34.2■■■■□ 3.07
CACNA1FO60840 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC34.2■■■■□ 3.07
CACNA1FO60840 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC34.19■■■■□ 3.06
CACNA1FO60840 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
CACNA1FO60840 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC34.19■■■■□ 3.06
CACNA1FO60840 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC34.19■■■■□ 3.06
CACNA1FO60840 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC34.18■■■■□ 3.06
CACNA1FO60840 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC34.18■■■■□ 3.06
CACNA1FO60840 AC044849.2-201ENST00000606596 710 ntBASIC34.18■■■■□ 3.06
CACNA1FO60840 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC34.17■■■■□ 3.06
CACNA1FO60840 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
CACNA1FO60840 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC34.17■■■■□ 3.06
CACNA1FO60840 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC34.17■■■■□ 3.06
Retrieved 100 of 98,524 protein–RNA pairs in 1257.6 ms