Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC22.72■■□□□ 1.23
NKX6-3A6NJ46 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
NKX6-3A6NJ46 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
NKX6-3A6NJ46 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
NKX6-3A6NJ46 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
NKX6-3A6NJ46 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC22.69■■□□□ 1.22
NKX6-3A6NJ46 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC22.68■■□□□ 1.22
NKX6-3A6NJ46 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NKX6-3A6NJ46 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC22.67■■□□□ 1.22
NKX6-3A6NJ46 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
NKX6-3A6NJ46 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
NKX6-3A6NJ46 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NKX6-3A6NJ46 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NKX6-3A6NJ46 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC22.65■■□□□ 1.22
NKX6-3A6NJ46 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NKX6-3A6NJ46 AC136428.2-201ENST00000563187 214 ntBASIC22.65■■□□□ 1.22
NKX6-3A6NJ46 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
NKX6-3A6NJ46 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
NKX6-3A6NJ46 WASH5P-204ENST00000632292 975 ntBASIC22.64■■□□□ 1.21
NKX6-3A6NJ46 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NKX6-3A6NJ46 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
NKX6-3A6NJ46 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
NKX6-3A6NJ46 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC22.61■■□□□ 1.21
NKX6-3A6NJ46 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
NKX6-3A6NJ46 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC22.6■■□□□ 1.21
NKX6-3A6NJ46 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NKX6-3A6NJ46 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NKX6-3A6NJ46 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NKX6-3A6NJ46 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NKX6-3A6NJ46 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
NKX6-3A6NJ46 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NKX6-3A6NJ46 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC22.57■■□□□ 1.2
NKX6-3A6NJ46 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC22.56■■□□□ 1.2
NKX6-3A6NJ46 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC22.56■■□□□ 1.2
NKX6-3A6NJ46 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
NKX6-3A6NJ46 AL391121.1-201ENST00000607967 1349 ntBASIC22.56■■□□□ 1.2
NKX6-3A6NJ46 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX6-3A6NJ46 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.55■■□□□ 1.2
NKX6-3A6NJ46 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NKX6-3A6NJ46 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NKX6-3A6NJ46 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NKX6-3A6NJ46 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC22.54■■□□□ 1.2
NKX6-3A6NJ46 EBPL-202ENST00000378268 680 ntTSL 3 BASIC22.54■■□□□ 1.2
NKX6-3A6NJ46 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NKX6-3A6NJ46 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC22.52■■□□□ 1.2
NKX6-3A6NJ46 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
NKX6-3A6NJ46 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.51■■□□□ 1.19
NKX6-3A6NJ46 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NKX6-3A6NJ46 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
NKX6-3A6NJ46 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NKX6-3A6NJ46 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
NKX6-3A6NJ46 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC22.5■■□□□ 1.19
NKX6-3A6NJ46 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NKX6-3A6NJ46 CAHM-201ENST00000604200 896 ntBASIC22.49■■□□□ 1.19
NKX6-3A6NJ46 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NKX6-3A6NJ46 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NKX6-3A6NJ46 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NKX6-3A6NJ46 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NKX6-3A6NJ46 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
NKX6-3A6NJ46 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NKX6-3A6NJ46 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC22.45■■□□□ 1.18
NKX6-3A6NJ46 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
NKX6-3A6NJ46 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
NKX6-3A6NJ46 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC22.43■■□□□ 1.18
NKX6-3A6NJ46 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
NKX6-3A6NJ46 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC22.42■■□□□ 1.18
NKX6-3A6NJ46 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.42■■□□□ 1.18
NKX6-3A6NJ46 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC22.42■■□□□ 1.18
NKX6-3A6NJ46 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
NKX6-3A6NJ46 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC22.41■■□□□ 1.18
NKX6-3A6NJ46 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NKX6-3A6NJ46 SUZ12P1-203ENST00000578195 985 ntBASIC22.4■■□□□ 1.18
NKX6-3A6NJ46 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NKX6-3A6NJ46 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NKX6-3A6NJ46 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
NKX6-3A6NJ46 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC22.37■■□□□ 1.17
NKX6-3A6NJ46 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
NKX6-3A6NJ46 DENR-202ENST00000455982 1052 ntTSL 5 BASIC22.37■■□□□ 1.17
NKX6-3A6NJ46 AL161658.1-201ENST00000623641 1967 ntBASIC22.37■■□□□ 1.17
NKX6-3A6NJ46 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
NKX6-3A6NJ46 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
NKX6-3A6NJ46 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
NKX6-3A6NJ46 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.36■■□□□ 1.17
NKX6-3A6NJ46 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX6-3A6NJ46 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX6-3A6NJ46 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX6-3A6NJ46 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
NKX6-3A6NJ46 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
NKX6-3A6NJ46 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
NKX6-3A6NJ46 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
NKX6-3A6NJ46 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
NKX6-3A6NJ46 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NKX6-3A6NJ46 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC22.33■■□□□ 1.17
NKX6-3A6NJ46 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.32■■□□□ 1.16
NKX6-3A6NJ46 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NKX6-3A6NJ46 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX6-3A6NJ46 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX6-3A6NJ46 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX6-3A6NJ46 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NKX6-3A6NJ46 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms