Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC36.49■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC36.48■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 MIR7108-201ENST00000614319 87 ntBASIC36.47■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC36.46■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC36.46■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC36.45■■■■□ 3.43
SENP3-EIF4A1A0A087X0R7 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC36.44■■■■□ 3.42
SENP3-EIF4A1A0A087X0R7 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC36.42■■■■□ 3.42
SENP3-EIF4A1A0A087X0R7 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC36.41■■■■□ 3.42
SENP3-EIF4A1A0A087X0R7 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
SENP3-EIF4A1A0A087X0R7 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC36.4■■■■□ 3.42
SENP3-EIF4A1A0A087X0R7 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC36.4■■■■□ 3.42
SENP3-EIF4A1A0A087X0R7 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC36.38■■■■□ 3.41
SENP3-EIF4A1A0A087X0R7 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC36.36■■■■□ 3.41
SENP3-EIF4A1A0A087X0R7 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC36.34■■■■□ 3.41
SENP3-EIF4A1A0A087X0R7 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC36.34■■■■□ 3.41
SENP3-EIF4A1A0A087X0R7 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC36.33■■■■□ 3.41
SENP3-EIF4A1A0A087X0R7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC36.33■■■■□ 3.41
SENP3-EIF4A1A0A087X0R7 AC136428.2-201ENST00000563187 214 ntBASIC36.32■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 HLA-V-202ENST00000446817 847 ntBASIC36.31■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC36.31■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 MBP-237ENST00000579129 1052 ntTSL 5 BASIC36.3■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC36.3■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC36.27■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC36.26■■■■□ 3.4
SENP3-EIF4A1A0A087X0R7 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC36.25■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC36.25■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC36.22■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC36.2■■■■□ 3.39
SENP3-EIF4A1A0A087X0R7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC36.19■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC36.18■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC36.17■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC36.17■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC36.15■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC36.14■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC36.14■■■■□ 3.38
SENP3-EIF4A1A0A087X0R7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC36.13■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC36.12■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC36.12■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 ABHD17AP4-201ENST00000411545 909 ntBASIC36.09■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC36.08■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC36.08■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 SETD8P1-201ENST00000623146 1180 ntBASIC36.08■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC36.07■■■■□ 3.37
SENP3-EIF4A1A0A087X0R7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC36.07■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 ABCB10P1-201ENST00000614297 2181 ntBASIC36.05■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC36.04■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC36.04■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 AL162393.1-201ENST00000437852 946 ntBASIC36.03■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC36.02■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC36.01■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC36.01■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 AL161658.1-201ENST00000623641 1967 ntBASIC36.01■■■■□ 3.36
SENP3-EIF4A1A0A087X0R7 AL133380.1-201ENST00000506013 324 ntBASIC36■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC35.99■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC35.98■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC35.97■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC35.97■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC35.95■■■■□ 3.35
SENP3-EIF4A1A0A087X0R7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC35.94■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC35.93■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC35.92■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC35.92■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC35.92■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC35.91■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC35.91■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC35.91■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC35.9■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC35.89■■■■□ 3.34
SENP3-EIF4A1A0A087X0R7 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC35.87■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC35.85■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC35.85■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC35.84■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC35.83■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC35.83■■■■□ 3.33
SENP3-EIF4A1A0A087X0R7 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC35.82■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC35.82■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC35.78■■■■□ 3.32
SENP3-EIF4A1A0A087X0R7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC35.78■■■■□ 3.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms