Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC29.54■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC29.53■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 C17orf82-201ENST00000623772 1530 ntBASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AL137784.2-201ENST00000607332 1000 ntBASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AC012676.1-201ENST00000574705 1949 ntBASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC29.5■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC29.5■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC29.5■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AL512631.2-201ENST00000604634 923 ntBASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC29.48■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC29.47■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC29.47■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.47■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AC004687.1-201ENST00000579003 1625 ntBASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AC099791.2-201ENST00000605725 427 ntBASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 LINC01529-204ENST00000636474 1715 ntBASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC29.45■■■□□ 2.31
SENP3-EIF4A1A0A087X0R7 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC29.45■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC29.44■■■□□ 2.3
SENP3-EIF4A1A0A087X0R7 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms