RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 NISCHQ9Y2I1 1504 aa46.18■■■■■ 4.98
SHMT1-202ENST00000352886 CCDC180Q9P1Z9 1646 aa39.54■■■■□ 3.92
SHMT1-202ENST00000352886 ZCCHC6Q5VYS8 1495 aaKnown RBP39.02■■■■□ 3.84
SHMT1-202ENST00000352886 SHROOM4Q9ULL8 1493 aa38.96■■■■□ 3.83
SHMT1-202ENST00000352886 DCAF8L2P0C7V8 631 aa38.17■■■■□ 3.7
SHMT1-202ENST00000352886 SUPT5HO00267 1087 aaKnown RBP38.06■■■■□ 3.68
SHMT1-202ENST00000352886 DCAF1Q9Y4B6 1507 aa37.98■■■■□ 3.67
SHMT1-202ENST00000352886 MYO15BQ96JP2 1530 aa37.01■■■■□ 3.52
SHMT1-202ENST00000352886 CHIC1Q5VXU3 224 aa36.91■■■■□ 3.5
SHMT1-202ENST00000352886 SCRIBQ14160 1630 aa36.86■■■■□ 3.49
SHMT1-202ENST00000352886 ABCC9O60706 1549 aa36.78■■■■□ 3.48
SHMT1-202ENST00000352886 NACADO15069 1562 aa36.57■■■■□ 3.44
SHMT1-202ENST00000352886 RSF1Q96T23 1441 aaPredicted RBP36.38■■■■□ 3.41
SHMT1-202ENST00000352886 RB1CC1Q8TDY2 1594 aa36.03■■■■□ 3.36
SHMT1-202ENST00000352886 CECR2Q9BXF3 1484 aa35.96■■■■□ 3.35
SHMT1-202ENST00000352886 MROH2BQ7Z745 1585 aa35.85■■■■□ 3.33
SHMT1-202ENST00000352886 LOC105371045A0A1W2PR82 267 aa35.74■■■■□ 3.31
SHMT1-202ENST00000352886 WIZO95785 1651 aa35.67■■■■□ 3.3
SHMT1-202ENST00000352886 TRIM41Q8WV44 630 aa35.54■■■■□ 3.28
SHMT1-202ENST00000352886 UNC13AQ9UPW8 1703 aa35.53■■■■□ 3.28
SHMT1-202ENST00000352886 BAZ1AQ9NRL2 1556 aaPredicted RBP35.52■■■■□ 3.28
SHMT1-202ENST00000352886 PCGF6Q9BYE7 350 aa35.4■■■■□ 3.26
SHMT1-202ENST00000352886 SMARCA4P51532 1647 aa35.27■■■■□ 3.24
SHMT1-202ENST00000352886 HRCP23327 699 aa35.23■■■■□ 3.23
SHMT1-202ENST00000352886 FAM9AQ8IZU1 332 aaPredicted RBP35.15■■■■□ 3.22
SHMT1-202ENST00000352886 TOP2AP11388 1531 aaKnown RBP35.14■■■■□ 3.22
SHMT1-202ENST00000352886 EIF4G1Q04637 1599 aaKnown RBP35.1■■■■□ 3.21
SHMT1-202ENST00000352886 BICRAQ9NZM4 1560 aa35.02■■■■□ 3.2
SHMT1-202ENST00000352886 PABPN1Q86U42 306 aaKnown RBP eCLIP34.94■■■■□ 3.18
SHMT1-202ENST00000352886 SMARCA2P51531 1590 aa34.93■■■■□ 3.18
SHMT1-202ENST00000352886 CCDC88BA6NC98 1476 aa34.92■■■■□ 3.18
SHMT1-202ENST00000352886 TRIM26Q12899 539 aaPredicted RBP34.88■■■■□ 3.17
SHMT1-202ENST00000352886 EHMT2Q96KQ7 1210 aa34.8■■■■□ 3.16
SHMT1-202ENST00000352886 ABCC8Q09428 1581 aa34.72■■■■□ 3.15
SHMT1-202ENST00000352886 PEG3Q9GZU2 1588 aa34.65■■■■□ 3.14
SHMT1-202ENST00000352886 PPARGC1BQ86YN6 1023 aaKnown RBP34.46■■■■□ 3.11
SHMT1-202ENST00000352886 ATAD2BQ9ULI0 1458 aa34.39■■■■□ 3.1
SHMT1-202ENST00000352886 SOGA1O94964 1423 aa34.3■■■■□ 3.08
SHMT1-202ENST00000352886 BAZ1BQ9UIG0 1483 aaKnown RBP34.29■■■■□ 3.08
SHMT1-202ENST00000352886 WRNQ14191 1432 aaPredicted RBP eCLIP34.2■■■■□ 3.06
SHMT1-202ENST00000352886 EEA1Q15075 1411 aa34.18■■■■□ 3.06
SHMT1-202ENST00000352886 RUSC2Q8N2Y8 1516 aa34.14■■■■□ 3.06
SHMT1-202ENST00000352886 CSRNP3Q8WYN3 585 aa34.08■■■■□ 3.05
SHMT1-202ENST00000352886 SYNJ1O43426 1573 aa34.06■■■■□ 3.04
SHMT1-202ENST00000352886 CEP162Q5TB80 1403 aa34.03■■■■□ 3.04
SHMT1-202ENST00000352886 TNIKQ9UKE5 1360 aa34.02■■■■□ 3.04
SHMT1-202ENST00000352886 ZEB1P37275 1124 aaPredicted RBP34■■■■□ 3.03
SHMT1-202ENST00000352886 GOLGA3Q08378 1498 aa33.9■■■■□ 3.02
SHMT1-202ENST00000352886 UBTFP17480 764 aaKnown RBP33.89■■■■□ 3.02
SHMT1-202ENST00000352886 HMGXB3Q12766 1538 aa33.82■■■■□ 3
SHMT1-202ENST00000352886 NCAPD3P42695 1498 aa33.79■■■■□ 3
SHMT1-202ENST00000352886 KIF21BO75037 1637 aa33.75■■■□□ 2.99
SHMT1-202ENST00000352886 CEP164Q9UPV0 1460 aa33.75■■■□□ 2.99
SHMT1-202ENST00000352886 TOP2BQ02880 1626 aa33.72■■■□□ 2.99
SHMT1-202ENST00000352886 BIVM-ERCC5R4GMW8 1640 aa33.63■■■□□ 2.97
SHMT1-202ENST00000352886 TTBK1Q5TCY1 1321 aaPredicted RBP33.61■■■□□ 2.97
SHMT1-202ENST00000352886 RAPGEF2Q9Y4G8 1499 aa33.51■■■□□ 2.95
SHMT1-202ENST00000352886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.49■■■□□ 2.95
SHMT1-202ENST00000352886 CLIP1P30622 1438 aa33.47■■■□□ 2.95
SHMT1-202ENST00000352886 CFTRP13569 1480 aa33.44■■■□□ 2.94
SHMT1-202ENST00000352886 CUX1P39880 1505 aa33.41■■■□□ 2.94
SHMT1-202ENST00000352886 CCER1Q8TC90 406 aaPredicted RBP33.41■■■□□ 2.94
SHMT1-202ENST00000352886 VPS8Q8N3P4 1428 aa33.31■■■□□ 2.92
SHMT1-202ENST00000352886 PRDM2Q13029 1718 aa33.3■■■□□ 2.92
SHMT1-202ENST00000352886 ERICH3Q5RHP9 1530 aa33.27■■■□□ 2.92
SHMT1-202ENST00000352886 PRXQ9BXM0 1461 aa33.25■■■□□ 2.91
SHMT1-202ENST00000352886 RANGAP1P46060 587 aaPredicted RBP33.21■■■□□ 2.91
SHMT1-202ENST00000352886 KIF27Q86VH2 1401 aa33.18■■■□□ 2.9
SHMT1-202ENST00000352886 CC2D2AQ9P2K1 1620 aa33.11■■■□□ 2.89
SHMT1-202ENST00000352886 APLP2Q06481 763 aa33.09■■■□□ 2.89
SHMT1-202ENST00000352886 CADPSQ9ULU8 1353 aa33.09■■■□□ 2.89
SHMT1-202ENST00000352886 ARAP1Q96P48 1450 aa32.98■■■□□ 2.87
SHMT1-202ENST00000352886 HNRNPUL2Q1KMD3 747 aaKnown RBP32.91■■■□□ 2.86
SHMT1-202ENST00000352886 CUX2O14529 1486 aa32.9■■■□□ 2.86
SHMT1-202ENST00000352886 FGD5Q6ZNL6 1462 aa32.86■■■□□ 2.85
SHMT1-202ENST00000352886 IGF1RP08069 1367 aa32.81■■■□□ 2.84
SHMT1-202ENST00000352886 FANCD2Q9BXW9 1451 aa32.79■■■□□ 2.84
SHMT1-202ENST00000352886 ARHGAP35Q9NRY4 1499 aa32.75■■■□□ 2.83
SHMT1-202ENST00000352886 KANK4Q5T7N3 995 aaPredicted RBP32.68■■■□□ 2.82
SHMT1-202ENST00000352886 CARMIL1Q5VZK9 1371 aa32.67■■■□□ 2.82
SHMT1-202ENST00000352886 DNMBPQ6XZF7 1577 aa32.63■■■□□ 2.81
SHMT1-202ENST00000352886 NESP48681 1621 aa32.61■■■□□ 2.81
SHMT1-202ENST00000352886 DIEXFQ68CQ4 756 aaKnown RBP32.57■■■□□ 2.8
SHMT1-202ENST00000352886 TOPBP1Q92547 1522 aa32.55■■■□□ 2.8
SHMT1-202ENST00000352886 RAD54L2Q9Y4B4 1467 aa32.52■■■□□ 2.8
SHMT1-202ENST00000352886 POLA1P09884 1462 aaPredicted RBP32.51■■■□□ 2.8
SHMT1-202ENST00000352886 ABCA10Q8WWZ4 1543 aa32.49■■■□□ 2.79
SHMT1-202ENST00000352886 RRBP1Q9P2E9 1410 aaKnown RBP32.49■■■□□ 2.79
SHMT1-202ENST00000352886 LAMC3Q9Y6N6 1575 aa32.44■■■□□ 2.78
SHMT1-202ENST00000352886 ZNF316A6NFI3 1004 aaPredicted RBP32.44■■■□□ 2.78
SHMT1-202ENST00000352886 TIAM1Q13009 1591 aa32.38■■■□□ 2.77
SHMT1-202ENST00000352886 MAP3K1Q13233 1512 aa32.36■■■□□ 2.77
SHMT1-202ENST00000352886 CCNB3Q8WWL7 1395 aa32.35■■■□□ 2.77
SHMT1-202ENST00000352886 CUL7Q14999 1698 aa32.33■■■□□ 2.77
SHMT1-202ENST00000352886 URB2Q14146 1524 aaKnown RBP32.33■■■□□ 2.77
SHMT1-202ENST00000352886 DHX57Q6P158 1386 aaKnown RBP32.3■■■□□ 2.76
SHMT1-202ENST00000352886 WDR97A6NE52 1622 aa32.29■■■□□ 2.76
SHMT1-202ENST00000352886 FHAD1B1AJZ9 1412 aa32.29■■■□□ 2.76
SHMT1-202ENST00000352886 CLSPNQ9HAW4 1339 aa32.26■■■□□ 2.76
SHMT1-202ENST00000352886 PCF11O94913 1555 aaKnown RBP32.24■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms