Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HNRNPLP2-201ENST00000568980 1570 ntBASIC27.28■■□□□ 1.96
PCDHGA1Q9Y5H4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHGA1Q9Y5H4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PCDHGA1Q9Y5H4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
PCDHGA1Q9Y5H4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
PCDHGA1Q9Y5H4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC27.25■■□□□ 1.95
PCDHGA1Q9Y5H4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC27.25■■□□□ 1.95
PCDHGA1Q9Y5H4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PCDHGA1Q9Y5H4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC27.25■■□□□ 1.95
PCDHGA1Q9Y5H4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PCDHGA1Q9Y5H4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHGA1Q9Y5H4 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PCDHGA1Q9Y5H4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PCDHGA1Q9Y5H4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.19■■□□□ 1.94
PCDHGA1Q9Y5H4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC27.19■■□□□ 1.94
PCDHGA1Q9Y5H4 MIR3665-201ENST00000578708 105 ntBASIC27.18■■□□□ 1.94
PCDHGA1Q9Y5H4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHGA1Q9Y5H4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC27.16■■□□□ 1.94
PCDHGA1Q9Y5H4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PCDHGA1Q9Y5H4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC27.14■■□□□ 1.94
PCDHGA1Q9Y5H4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC27.14■■□□□ 1.94
PCDHGA1Q9Y5H4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
PCDHGA1Q9Y5H4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHGA1Q9Y5H4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
PCDHGA1Q9Y5H4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
PCDHGA1Q9Y5H4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC27.11■■□□□ 1.93
PCDHGA1Q9Y5H4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.1■■□□□ 1.93
PCDHGA1Q9Y5H4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.1■■□□□ 1.93
PCDHGA1Q9Y5H4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHGA1Q9Y5H4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
PCDHGA1Q9Y5H4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
PCDHGA1Q9Y5H4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.08■■□□□ 1.93
PCDHGA1Q9Y5H4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.07■■□□□ 1.92
PCDHGA1Q9Y5H4 ABHD17AP4-201ENST00000411545 909 ntBASIC27.07■■□□□ 1.92
PCDHGA1Q9Y5H4 MIR7108-201ENST00000614319 87 ntBASIC27.04■■□□□ 1.92
PCDHGA1Q9Y5H4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC27.03■■□□□ 1.92
PCDHGA1Q9Y5H4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
PCDHGA1Q9Y5H4 AC087741.3-201ENST00000624270 1347 ntBASIC27.01■■□□□ 1.91
PCDHGA1Q9Y5H4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
PCDHGA1Q9Y5H4 CHML-205ENST00000638160 705 ntTSL 3 BASIC26.99■■□□□ 1.91
PCDHGA1Q9Y5H4 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
PCDHGA1Q9Y5H4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
PCDHGA1Q9Y5H4 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
PCDHGA1Q9Y5H4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC26.95■■□□□ 1.9
PCDHGA1Q9Y5H4 DUX4L28-201ENST00000623687 678 ntBASIC26.95■■□□□ 1.9
PCDHGA1Q9Y5H4 AC044849.2-201ENST00000606596 710 ntBASIC26.94■■□□□ 1.9
PCDHGA1Q9Y5H4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PCDHGA1Q9Y5H4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC26.93■■□□□ 1.9
PCDHGA1Q9Y5H4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHGA1Q9Y5H4 MIR762-201ENST00000390236 83 ntBASIC26.9■■□□□ 1.9
PCDHGA1Q9Y5H4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC26.9■■□□□ 1.9
PCDHGA1Q9Y5H4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
PCDHGA1Q9Y5H4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC26.89■■□□□ 1.9
PCDHGA1Q9Y5H4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.88■■□□□ 1.89
PCDHGA1Q9Y5H4 AC005559.1-201ENST00000589661 871 ntBASIC26.87■■□□□ 1.89
PCDHGA1Q9Y5H4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PCDHGA1Q9Y5H4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC26.85■■□□□ 1.89
PCDHGA1Q9Y5H4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
PCDHGA1Q9Y5H4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC26.83■■□□□ 1.89
PCDHGA1Q9Y5H4 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC26.82■■□□□ 1.88
PCDHGA1Q9Y5H4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC26.82■■□□□ 1.88
PCDHGA1Q9Y5H4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
PCDHGA1Q9Y5H4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
PCDHGA1Q9Y5H4 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC26.8■■□□□ 1.88
PCDHGA1Q9Y5H4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
PCDHGA1Q9Y5H4 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PCDHGA1Q9Y5H4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PCDHGA1Q9Y5H4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHGA1Q9Y5H4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC26.77■■□□□ 1.88
PCDHGA1Q9Y5H4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC26.77■■□□□ 1.88
PCDHGA1Q9Y5H4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC26.76■■□□□ 1.87
PCDHGA1Q9Y5H4 HLA-V-202ENST00000446817 847 ntBASIC26.76■■□□□ 1.87
PCDHGA1Q9Y5H4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC26.76■■□□□ 1.87
PCDHGA1Q9Y5H4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC26.75■■□□□ 1.87
PCDHGA1Q9Y5H4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.74■■□□□ 1.87
PCDHGA1Q9Y5H4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.74■■□□□ 1.87
PCDHGA1Q9Y5H4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.74■■□□□ 1.87
PCDHGA1Q9Y5H4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.74■■□□□ 1.87
PCDHGA1Q9Y5H4 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHGA1Q9Y5H4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHGA1Q9Y5H4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
PCDHGA1Q9Y5H4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.71■■□□□ 1.87
PCDHGA1Q9Y5H4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.7■■□□□ 1.87
PCDHGA1Q9Y5H4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHGA1Q9Y5H4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHGA1Q9Y5H4 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
PCDHGA1Q9Y5H4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC26.69■■□□□ 1.86
PCDHGA1Q9Y5H4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC26.69■■□□□ 1.86
PCDHGA1Q9Y5H4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.69■■□□□ 1.86
PCDHGA1Q9Y5H4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
PCDHGA1Q9Y5H4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHGA1Q9Y5H4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC26.67■■□□□ 1.86
PCDHGA1Q9Y5H4 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
PCDHGA1Q9Y5H4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHGA1Q9Y5H4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
PCDHGA1Q9Y5H4 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
PCDHGA1Q9Y5H4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
PCDHGA1Q9Y5H4 ZNRF2P2-203ENST00000454624 420 ntBASIC26.63■■□□□ 1.85
PCDHGA1Q9Y5H4 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.63■■□□□ 1.85
PCDHGA1Q9Y5H4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms