Protein–RNA interactions for Protein: Q9Y3P8

SIT1, Signaling threshold-regulating transmembrane adapter 1, humanhuman

Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIT1Q9Y3P8 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SIT1Q9Y3P8 MIR7108-201ENST00000614319 87 ntBASIC28.92■■■□□ 2.22
SIT1Q9Y3P8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SIT1Q9Y3P8 AC145285.7-201ENST00000614819 1539 ntBASIC28.92■■■□□ 2.22
SIT1Q9Y3P8 ABHD17AP4-201ENST00000411545 909 ntBASIC28.9■■■□□ 2.22
SIT1Q9Y3P8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
SIT1Q9Y3P8 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.87■■■□□ 2.21
SIT1Q9Y3P8 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.86■■■□□ 2.21
SIT1Q9Y3P8 AL133380.1-201ENST00000506013 324 ntBASIC28.85■■■□□ 2.21
SIT1Q9Y3P8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
SIT1Q9Y3P8 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.84■■■□□ 2.21
SIT1Q9Y3P8 MIR3665-201ENST00000578708 105 ntBASIC28.84■■■□□ 2.21
SIT1Q9Y3P8 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.82■■■□□ 2.2
SIT1Q9Y3P8 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
SIT1Q9Y3P8 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
SIT1Q9Y3P8 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.8■■■□□ 2.2
SIT1Q9Y3P8 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
SIT1Q9Y3P8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.78■■■□□ 2.2
SIT1Q9Y3P8 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.78■■■□□ 2.2
SIT1Q9Y3P8 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.77■■■□□ 2.2
SIT1Q9Y3P8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.76■■■□□ 2.19
SIT1Q9Y3P8 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.75■■■□□ 2.19
SIT1Q9Y3P8 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SIT1Q9Y3P8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
SIT1Q9Y3P8 AC087741.3-201ENST00000624270 1347 ntBASIC28.69■■■□□ 2.18
SIT1Q9Y3P8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SIT1Q9Y3P8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.68■■■□□ 2.18
SIT1Q9Y3P8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.68■■■□□ 2.18
SIT1Q9Y3P8 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SIT1Q9Y3P8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SIT1Q9Y3P8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SIT1Q9Y3P8 HLA-V-202ENST00000446817 847 ntBASIC28.64■■■□□ 2.18
SIT1Q9Y3P8 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.64■■■□□ 2.18
SIT1Q9Y3P8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
SIT1Q9Y3P8 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
SIT1Q9Y3P8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.62■■■□□ 2.17
SIT1Q9Y3P8 DUX4L28-201ENST00000623687 678 ntBASIC28.62■■■□□ 2.17
SIT1Q9Y3P8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.61■■■□□ 2.17
SIT1Q9Y3P8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.61■■■□□ 2.17
SIT1Q9Y3P8 AC044849.2-201ENST00000606596 710 ntBASIC28.6■■■□□ 2.17
SIT1Q9Y3P8 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.59■■■□□ 2.17
SIT1Q9Y3P8 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.58■■■□□ 2.17
SIT1Q9Y3P8 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.57■■■□□ 2.16
SIT1Q9Y3P8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SIT1Q9Y3P8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SIT1Q9Y3P8 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.54■■■□□ 2.16
SIT1Q9Y3P8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.53■■■□□ 2.16
SIT1Q9Y3P8 MIR762-201ENST00000390236 83 ntBASIC28.52■■■□□ 2.16
SIT1Q9Y3P8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
SIT1Q9Y3P8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.51■■■□□ 2.15
SIT1Q9Y3P8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.5■■■□□ 2.15
SIT1Q9Y3P8 AC005559.1-201ENST00000589661 871 ntBASIC28.5■■■□□ 2.15
SIT1Q9Y3P8 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SIT1Q9Y3P8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.49■■■□□ 2.15
SIT1Q9Y3P8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
SIT1Q9Y3P8 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.48■■■□□ 2.15
SIT1Q9Y3P8 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
SIT1Q9Y3P8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.45■■■□□ 2.14
SIT1Q9Y3P8 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SIT1Q9Y3P8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SIT1Q9Y3P8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SIT1Q9Y3P8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.42■■■□□ 2.14
SIT1Q9Y3P8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.4■■■□□ 2.14
SIT1Q9Y3P8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.4■■■□□ 2.14
SIT1Q9Y3P8 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.39■■■□□ 2.14
SIT1Q9Y3P8 ZNRF2P2-203ENST00000454624 420 ntBASIC28.39■■■□□ 2.14
SIT1Q9Y3P8 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SIT1Q9Y3P8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.36■■■□□ 2.13
SIT1Q9Y3P8 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.36■■■□□ 2.13
SIT1Q9Y3P8 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.36■■■□□ 2.13
SIT1Q9Y3P8 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.36■■■□□ 2.13
SIT1Q9Y3P8 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.35■■■□□ 2.13
SIT1Q9Y3P8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
SIT1Q9Y3P8 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.33■■■□□ 2.13
SIT1Q9Y3P8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SIT1Q9Y3P8 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SIT1Q9Y3P8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SIT1Q9Y3P8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
SIT1Q9Y3P8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.26■■■□□ 2.11
SIT1Q9Y3P8 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
SIT1Q9Y3P8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SIT1Q9Y3P8 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.22■■■□□ 2.11
SIT1Q9Y3P8 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
SIT1Q9Y3P8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SIT1Q9Y3P8 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
SIT1Q9Y3P8 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.19■■■□□ 2.1
SIT1Q9Y3P8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
SIT1Q9Y3P8 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.18■■■□□ 2.1
SIT1Q9Y3P8 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SIT1Q9Y3P8 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.18■■■□□ 2.1
SIT1Q9Y3P8 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SIT1Q9Y3P8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SIT1Q9Y3P8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
SIT1Q9Y3P8 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.16■■■□□ 2.1
SIT1Q9Y3P8 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.15■■■□□ 2.1
SIT1Q9Y3P8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.15■■■□□ 2.1
SIT1Q9Y3P8 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SIT1Q9Y3P8 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
SIT1Q9Y3P8 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
SIT1Q9Y3P8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms