Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.05■■■□□ 2.4
TTC28Q96AY4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
TTC28Q96AY4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.05■■■□□ 2.4
TTC28Q96AY4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.03■■■□□ 2.4
TTC28Q96AY4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
TTC28Q96AY4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
TTC28Q96AY4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
TTC28Q96AY4 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
TTC28Q96AY4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.98■■■□□ 2.39
TTC28Q96AY4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
TTC28Q96AY4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC29.95■■■□□ 2.39
TTC28Q96AY4 AC044849.2-201ENST00000606596 710 ntBASIC29.95■■■□□ 2.38
TTC28Q96AY4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.9■■■□□ 2.38
TTC28Q96AY4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.9■■■□□ 2.38
TTC28Q96AY4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.9■■■□□ 2.38
TTC28Q96AY4 HSD17B1P1-201ENST00000590052 955 ntBASIC29.89■■■□□ 2.38
TTC28Q96AY4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.89■■■□□ 2.38
TTC28Q96AY4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.88■■■□□ 2.37
TTC28Q96AY4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.87■■■□□ 2.37
TTC28Q96AY4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
TTC28Q96AY4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.86■■■□□ 2.37
TTC28Q96AY4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.86■■■□□ 2.37
TTC28Q96AY4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
TTC28Q96AY4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC29.84■■■□□ 2.37
TTC28Q96AY4 DUX4L28-201ENST00000623687 678 ntBASIC29.84■■■□□ 2.37
TTC28Q96AY4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
TTC28Q96AY4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC29.81■■■□□ 2.36
TTC28Q96AY4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.78■■■□□ 2.36
TTC28Q96AY4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.72■■■□□ 2.35
TTC28Q96AY4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC29.7■■■□□ 2.34
TTC28Q96AY4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
TTC28Q96AY4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
TTC28Q96AY4 MIR639-201ENST00000384974 98 ntBASIC29.67■■■□□ 2.34
TTC28Q96AY4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
TTC28Q96AY4 ZNRF2P2-203ENST00000454624 420 ntBASIC29.66■■■□□ 2.34
TTC28Q96AY4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.65■■■□□ 2.34
TTC28Q96AY4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.64■■■□□ 2.34
TTC28Q96AY4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.64■■■□□ 2.33
TTC28Q96AY4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
TTC28Q96AY4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.62■■■□□ 2.33
TTC28Q96AY4 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.62■■■□□ 2.33
TTC28Q96AY4 MIR762-201ENST00000390236 83 ntBASIC29.61■■■□□ 2.33
TTC28Q96AY4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
TTC28Q96AY4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
TTC28Q96AY4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.59■■■□□ 2.33
TTC28Q96AY4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
TTC28Q96AY4 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
TTC28Q96AY4 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
TTC28Q96AY4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
TTC28Q96AY4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
TTC28Q96AY4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC29.56■■■□□ 2.32
TTC28Q96AY4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC29.56■■■□□ 2.32
TTC28Q96AY4 AC005559.1-201ENST00000589661 871 ntBASIC29.55■■■□□ 2.32
TTC28Q96AY4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.54■■■□□ 2.32
TTC28Q96AY4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
TTC28Q96AY4 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.52■■■□□ 2.32
TTC28Q96AY4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.5■■■□□ 2.31
TTC28Q96AY4 AL133380.1-201ENST00000506013 324 ntBASIC29.49■■■□□ 2.31
TTC28Q96AY4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
TTC28Q96AY4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.47■■■□□ 2.31
TTC28Q96AY4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.46■■■□□ 2.31
TTC28Q96AY4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.44■■■□□ 2.3
TTC28Q96AY4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
TTC28Q96AY4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
TTC28Q96AY4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
TTC28Q96AY4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC29.37■■■□□ 2.29
TTC28Q96AY4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.35■■■□□ 2.29
TTC28Q96AY4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
TTC28Q96AY4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
TTC28Q96AY4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.34■■■□□ 2.29
TTC28Q96AY4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.32■■■□□ 2.28
TTC28Q96AY4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC29.32■■■□□ 2.28
TTC28Q96AY4 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.3■■■□□ 2.28
TTC28Q96AY4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
TTC28Q96AY4 AC145285.7-201ENST00000614819 1539 ntBASIC29.27■■■□□ 2.28
TTC28Q96AY4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.26■■■□□ 2.27
TTC28Q96AY4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.26■■■□□ 2.27
TTC28Q96AY4 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.25■■■□□ 2.27
TTC28Q96AY4 MIR3648-2-201ENST00000581792 180 ntBASIC29.25■■■□□ 2.27
TTC28Q96AY4 MIR3648-1-201ENST00000615959 180 ntBASIC29.25■■■□□ 2.27
TTC28Q96AY4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.23■■■□□ 2.27
TTC28Q96AY4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
TTC28Q96AY4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
TTC28Q96AY4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
TTC28Q96AY4 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
TTC28Q96AY4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
TTC28Q96AY4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
TTC28Q96AY4 MVK-208ENST00000539696 608 ntTSL 5 BASIC29.19■■■□□ 2.26
TTC28Q96AY4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
TTC28Q96AY4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
TTC28Q96AY4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
TTC28Q96AY4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.17■■■□□ 2.26
TTC28Q96AY4 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
TTC28Q96AY4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.17■■■□□ 2.26
TTC28Q96AY4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
TTC28Q96AY4 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.16■■■□□ 2.26
TTC28Q96AY4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC29.14■■■□□ 2.25
TTC28Q96AY4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
TTC28Q96AY4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
TTC28Q96AY4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.12■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms