Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 SUZ12P1-203ENST00000578195 985 ntBASIC29.86■■■□□ 2.37
VARS2Q5ST30 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
VARS2Q5ST30 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VARS2Q5ST30 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VARS2Q5ST30 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.85■■■□□ 2.37
VARS2Q5ST30 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
VARS2Q5ST30 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
VARS2Q5ST30 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
VARS2Q5ST30 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.82■■■□□ 2.36
VARS2Q5ST30 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
VARS2Q5ST30 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
VARS2Q5ST30 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
VARS2Q5ST30 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC29.79■■■□□ 2.36
VARS2Q5ST30 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
VARS2Q5ST30 AL133380.1-201ENST00000506013 324 ntBASIC29.76■■■□□ 2.35
VARS2Q5ST30 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.76■■■□□ 2.35
VARS2Q5ST30 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.74■■■□□ 2.35
VARS2Q5ST30 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.74■■■□□ 2.35
VARS2Q5ST30 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
VARS2Q5ST30 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.73■■■□□ 2.35
VARS2Q5ST30 CAHM-201ENST00000604200 896 ntBASIC29.72■■■□□ 2.35
VARS2Q5ST30 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.71■■■□□ 2.35
VARS2Q5ST30 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
VARS2Q5ST30 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
VARS2Q5ST30 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
VARS2Q5ST30 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.67■■■□□ 2.34
VARS2Q5ST30 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC29.65■■■□□ 2.34
VARS2Q5ST30 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.33
VARS2Q5ST30 AL391121.1-201ENST00000607967 1349 ntBASIC29.62■■■□□ 2.33
VARS2Q5ST30 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.61■■■□□ 2.33
VARS2Q5ST30 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
VARS2Q5ST30 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC29.59■■■□□ 2.33
VARS2Q5ST30 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC29.58■■■□□ 2.33
VARS2Q5ST30 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
VARS2Q5ST30 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
VARS2Q5ST30 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29.55■■■□□ 2.32
VARS2Q5ST30 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
VARS2Q5ST30 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC29.51■■■□□ 2.31
VARS2Q5ST30 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
VARS2Q5ST30 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
VARS2Q5ST30 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
VARS2Q5ST30 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
VARS2Q5ST30 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC29.49■■■□□ 2.31
VARS2Q5ST30 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
VARS2Q5ST30 RPS2P35-201ENST00000443417 897 ntBASIC29.47■■■□□ 2.31
VARS2Q5ST30 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
VARS2Q5ST30 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC29.46■■■□□ 2.31
VARS2Q5ST30 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
VARS2Q5ST30 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.44■■■□□ 2.3
VARS2Q5ST30 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
VARS2Q5ST30 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
VARS2Q5ST30 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
VARS2Q5ST30 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.39■■■□□ 2.3
VARS2Q5ST30 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.38■■■□□ 2.29
VARS2Q5ST30 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
VARS2Q5ST30 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
VARS2Q5ST30 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.34■■■□□ 2.29
VARS2Q5ST30 AL162393.1-201ENST00000437852 946 ntBASIC29.33■■■□□ 2.29
VARS2Q5ST30 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.33■■■□□ 2.29
VARS2Q5ST30 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.33■■■□□ 2.29
VARS2Q5ST30 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
VARS2Q5ST30 AP006261.1-201ENST00000584783 668 ntBASIC29.32■■■□□ 2.28
VARS2Q5ST30 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.32■■■□□ 2.28
VARS2Q5ST30 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
VARS2Q5ST30 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
VARS2Q5ST30 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.28■■■□□ 2.28
VARS2Q5ST30 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
VARS2Q5ST30 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
VARS2Q5ST30 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
VARS2Q5ST30 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
VARS2Q5ST30 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC29.26■■■□□ 2.27
VARS2Q5ST30 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
VARS2Q5ST30 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC29.26■■■□□ 2.27
VARS2Q5ST30 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
VARS2Q5ST30 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
VARS2Q5ST30 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
VARS2Q5ST30 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
VARS2Q5ST30 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.24■■■□□ 2.27
VARS2Q5ST30 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
VARS2Q5ST30 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
VARS2Q5ST30 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.22■■■□□ 2.27
VARS2Q5ST30 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
VARS2Q5ST30 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
VARS2Q5ST30 WASH5P-204ENST00000632292 975 ntBASIC29.2■■■□□ 2.26
VARS2Q5ST30 MIR762-201ENST00000390236 83 ntBASIC29.16■■■□□ 2.26
VARS2Q5ST30 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.16■■■□□ 2.26
VARS2Q5ST30 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.16■■■□□ 2.26
VARS2Q5ST30 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
VARS2Q5ST30 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
VARS2Q5ST30 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.15■■■□□ 2.26
VARS2Q5ST30 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
VARS2Q5ST30 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
VARS2Q5ST30 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
VARS2Q5ST30 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
VARS2Q5ST30 MIR3665-201ENST00000578708 105 ntBASIC29.14■■■□□ 2.26
VARS2Q5ST30 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC29.14■■■□□ 2.25
VARS2Q5ST30 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.25
VARS2Q5ST30 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
VARS2Q5ST30 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
VARS2Q5ST30 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms