Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC087741.3-201ENST00000624270 1347 ntBASIC38.68■■■■□ 3.78
RXRBP28702 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC38.68■■■■□ 3.78
RXRBP28702 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC38.68■■■■□ 3.78
RXRBP28702 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC38.65■■■■□ 3.78
RXRBP28702 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC38.64■■■■□ 3.78
RXRBP28702 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC38.62■■■■□ 3.77
RXRBP28702 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC38.61■■■■□ 3.77
RXRBP28702 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC38.6■■■■□ 3.77
RXRBP28702 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC38.59■■■■□ 3.77
RXRBP28702 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC38.58■■■■□ 3.77
RXRBP28702 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC38.58■■■■□ 3.77
RXRBP28702 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC38.55■■■■□ 3.76
RXRBP28702 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC38.53■■■■□ 3.76
RXRBP28702 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC38.5■■■■□ 3.75
RXRBP28702 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC38.5■■■■□ 3.75
RXRBP28702 AC044849.2-201ENST00000606596 710 ntBASIC38.5■■■■□ 3.75
RXRBP28702 ZNRF2P2-203ENST00000454624 420 ntBASIC38.46■■■■□ 3.75
RXRBP28702 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC38.46■■■■□ 3.75
RXRBP28702 DUX4L28-201ENST00000623687 678 ntBASIC38.45■■■■□ 3.75
RXRBP28702 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC38.43■■■■□ 3.74
RXRBP28702 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC38.43■■■■□ 3.74
RXRBP28702 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC38.43■■■■□ 3.74
RXRBP28702 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC38.39■■■■□ 3.74
RXRBP28702 EBPL-202ENST00000378268 680 ntTSL 3 BASIC38.37■■■■□ 3.73
RXRBP28702 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC38.36■■■■□ 3.73
RXRBP28702 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC38.35■■■■□ 3.73
RXRBP28702 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC38.35■■■■□ 3.73
RXRBP28702 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC38.32■■■■□ 3.72
RXRBP28702 AL133380.1-201ENST00000506013 324 ntBASIC38.3■■■■□ 3.72
RXRBP28702 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC38.28■■■■□ 3.72
RXRBP28702 MIR4449-201ENST00000578365 66 ntBASIC38.28■■■■□ 3.72
RXRBP28702 RPS2-202ENST00000526522 924 ntTSL 2 BASIC38.26■■■■□ 3.72
RXRBP28702 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC38.25■■■■□ 3.71
RXRBP28702 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC38.25■■■■□ 3.71
RXRBP28702 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
RXRBP28702 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
RXRBP28702 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
RXRBP28702 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC38.21■■■■□ 3.71
RXRBP28702 CHML-205ENST00000638160 705 ntTSL 3 BASIC38.2■■■■□ 3.71
RXRBP28702 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC38.19■■■■□ 3.7
RXRBP28702 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC38.16■■■■□ 3.7
RXRBP28702 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC38.13■■■■□ 3.69
RXRBP28702 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC38.12■■■■□ 3.69
RXRBP28702 MIR762-201ENST00000390236 83 ntBASIC38.1■■■■□ 3.69
RXRBP28702 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC38.1■■■■□ 3.69
RXRBP28702 AC005559.1-201ENST00000589661 871 ntBASIC38.1■■■■□ 3.69
RXRBP28702 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC38.1■■■■□ 3.69
RXRBP28702 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC38.09■■■■□ 3.69
RXRBP28702 BOD1-206ENST00000480951 814 ntTSL 2 BASIC38.09■■■■□ 3.69
RXRBP28702 MVK-208ENST00000539696 608 ntTSL 5 BASIC38.08■■■■□ 3.69
RXRBP28702 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
RXRBP28702 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC38.05■■■■□ 3.68
RXRBP28702 HSD17B1P1-201ENST00000590052 955 ntBASIC38.03■■■■□ 3.68
RXRBP28702 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC38.02■■■■□ 3.68
RXRBP28702 HGH1-207ENST00000628266 258 ntTSL 5 BASIC38.01■■■■□ 3.68
RXRBP28702 MIR639-201ENST00000384974 98 ntBASIC38■■■■□ 3.67
RXRBP28702 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC37.97■■■■□ 3.67
RXRBP28702 BRD4-212ENST00000630599 726 ntTSL 2 BASIC37.96■■■■□ 3.67
RXRBP28702 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC37.95■■■■□ 3.67
RXRBP28702 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC37.94■■■■□ 3.66
RXRBP28702 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC37.92■■■■□ 3.66
RXRBP28702 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC37.9■■■■□ 3.66
RXRBP28702 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
RXRBP28702 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC37.9■■■■□ 3.66
RXRBP28702 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC37.89■■■■□ 3.66
RXRBP28702 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC37.89■■■■□ 3.66
RXRBP28702 AC145285.7-201ENST00000614819 1539 ntBASIC37.88■■■■□ 3.65
RXRBP28702 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
RXRBP28702 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
RXRBP28702 CALM3-209ENST00000597743 577 ntTSL 4 BASIC37.85■■■■□ 3.65
RXRBP28702 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC37.85■■■■□ 3.65
RXRBP28702 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
RXRBP28702 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC37.83■■■■□ 3.65
RXRBP28702 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC37.81■■■■□ 3.64
RXRBP28702 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC37.78■■■■□ 3.64
RXRBP28702 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC37.78■■■■□ 3.64
RXRBP28702 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC37.76■■■■□ 3.64
RXRBP28702 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC37.75■■■■□ 3.63
RXRBP28702 MACF1-219ENST00000484793 834 ntTSL 2 BASIC37.75■■■■□ 3.63
RXRBP28702 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC37.75■■■■□ 3.63
RXRBP28702 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
RXRBP28702 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC37.72■■■■□ 3.63
RXRBP28702 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC37.72■■■■□ 3.63
RXRBP28702 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC37.69■■■■□ 3.62
RXRBP28702 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC37.68■■■■□ 3.62
RXRBP28702 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC37.68■■■■□ 3.62
RXRBP28702 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC37.64■■■■□ 3.62
RXRBP28702 DUX4L29-201ENST00000425409 679 ntBASIC37.63■■■■□ 3.61
RXRBP28702 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC37.63■■■■□ 3.61
RXRBP28702 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC37.6■■■■□ 3.61
RXRBP28702 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC37.59■■■■□ 3.61
RXRBP28702 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC37.58■■■■□ 3.61
RXRBP28702 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC37.57■■■■□ 3.6
RXRBP28702 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC37.56■■■■□ 3.6
RXRBP28702 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC37.56■■■■□ 3.6
RXRBP28702 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
RXRBP28702 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
RXRBP28702 AC016575.1-201ENST00000607026 382 ntBASIC37.54■■■■□ 3.6
RXRBP28702 ABHD17AP3-201ENST00000503096 1137 ntBASIC37.53■■■■□ 3.6
RXRBP28702 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC37.52■■■■□ 3.6
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms