Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
RETP07949 AL391121.1-201ENST00000607967 1349 ntBASIC28.36■■■□□ 2.13
RETP07949 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
RETP07949 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
RETP07949 ABHD17AP4-201ENST00000411545 909 ntBASIC28.35■■■□□ 2.13
RETP07949 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
RETP07949 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
RETP07949 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.3■■■□□ 2.12
RETP07949 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
RETP07949 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.27■■■□□ 2.12
RETP07949 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
RETP07949 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.26■■■□□ 2.11
RETP07949 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
RETP07949 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
RETP07949 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
RETP07949 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RETP07949 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RETP07949 MIR3665-201ENST00000578708 105 ntBASIC28.23■■■□□ 2.11
RETP07949 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
RETP07949 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
RETP07949 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.22■■■□□ 2.11
RETP07949 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.21■■■□□ 2.11
RETP07949 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.21■■■□□ 2.11
RETP07949 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.2■■■□□ 2.1
RETP07949 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.17■■■□□ 2.1
RETP07949 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RETP07949 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.16■■■□□ 2.1
RETP07949 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RETP07949 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
RETP07949 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.14■■■□□ 2.09
RETP07949 HLA-V-202ENST00000446817 847 ntBASIC28.13■■■□□ 2.09
RETP07949 AL133380.1-201ENST00000506013 324 ntBASIC28.13■■■□□ 2.09
RETP07949 ILK-212ENST00000532063 1617 ntTSL 2 BASIC28.12■■■□□ 2.09
RETP07949 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.12■■■□□ 2.09
RETP07949 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
RETP07949 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.1■■■□□ 2.09
RETP07949 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
RETP07949 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
RETP07949 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.09■■■□□ 2.09
RETP07949 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.08■■■□□ 2.09
RETP07949 AC145285.7-201ENST00000614819 1539 ntBASIC28.08■■■□□ 2.08
RETP07949 AC087741.3-201ENST00000624270 1347 ntBASIC28.07■■■□□ 2.08
RETP07949 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.06■■■□□ 2.08
RETP07949 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.04■■■□□ 2.08
RETP07949 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
RETP07949 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.03■■■□□ 2.08
RETP07949 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
RETP07949 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.02■■■□□ 2.08
RETP07949 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.08
RETP07949 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
RETP07949 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
RETP07949 AC044849.2-201ENST00000606596 710 ntBASIC27.99■■■□□ 2.07
RETP07949 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
RETP07949 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.97■■■□□ 2.07
RETP07949 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.97■■■□□ 2.07
RETP07949 DUX4L28-201ENST00000623687 678 ntBASIC27.97■■■□□ 2.07
RETP07949 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.96■■■□□ 2.07
RETP07949 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.92■■■□□ 2.06
RETP07949 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
RETP07949 CHML-205ENST00000638160 705 ntTSL 3 BASIC27.92■■■□□ 2.06
RETP07949 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
RETP07949 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.91■■■□□ 2.06
RETP07949 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
RETP07949 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
RETP07949 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.88■■■□□ 2.05
RETP07949 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.88■■■□□ 2.05
RETP07949 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
RETP07949 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.87■■■□□ 2.05
RETP07949 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
RETP07949 MIR762-201ENST00000390236 83 ntBASIC27.85■■■□□ 2.05
RETP07949 AC005559.1-201ENST00000589661 871 ntBASIC27.83■■■□□ 2.05
RETP07949 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC27.82■■■□□ 2.04
RETP07949 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
RETP07949 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC27.81■■■□□ 2.04
RETP07949 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.81■■■□□ 2.04
RETP07949 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.8■■■□□ 2.04
RETP07949 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27.79■■■□□ 2.04
RETP07949 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27.79■■■□□ 2.04
RETP07949 ZNRF2P2-203ENST00000454624 420 ntBASIC27.79■■■□□ 2.04
RETP07949 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC27.79■■■□□ 2.04
RETP07949 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC27.78■■■□□ 2.04
RETP07949 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RETP07949 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
RETP07949 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
RETP07949 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.76■■■□□ 2.03
RETP07949 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
RETP07949 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.74■■■□□ 2.03
RETP07949 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
RETP07949 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
RETP07949 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.72■■■□□ 2.03
RETP07949 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
RETP07949 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC27.71■■■□□ 2.03
RETP07949 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
RETP07949 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC27.7■■■□□ 2.03
RETP07949 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
RETP07949 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.69■■■□□ 2.02
RETP07949 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
RETP07949 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.69■■■□□ 2.02
RETP07949 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.67■■■□□ 2.02
RETP07949 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.67■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms