Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
ABCA1O95477 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC23.43■■□□□ 1.34
ABCA1O95477 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.43■■□□□ 1.34
ABCA1O95477 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
ABCA1O95477 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
ABCA1O95477 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
ABCA1O95477 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA1O95477 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
ABCA1O95477 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
ABCA1O95477 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.36■■□□□ 1.33
ABCA1O95477 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
ABCA1O95477 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
ABCA1O95477 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
ABCA1O95477 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
ABCA1O95477 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC23.36■■□□□ 1.33
ABCA1O95477 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
ABCA1O95477 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
ABCA1O95477 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC23.34■■□□□ 1.33
ABCA1O95477 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC23.33■■□□□ 1.33
ABCA1O95477 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.31■■□□□ 1.32
ABCA1O95477 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ABCA1O95477 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
ABCA1O95477 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.3■■□□□ 1.32
ABCA1O95477 ABHD17AP4-201ENST00000411545 909 ntBASIC23.29■■□□□ 1.32
ABCA1O95477 AL133380.1-201ENST00000506013 324 ntBASIC23.27■■□□□ 1.32
ABCA1O95477 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
ABCA1O95477 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
ABCA1O95477 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC23.26■■□□□ 1.31
ABCA1O95477 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
ABCA1O95477 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC23.26■■□□□ 1.31
ABCA1O95477 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.26■■□□□ 1.31
ABCA1O95477 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
ABCA1O95477 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
ABCA1O95477 MIR3665-201ENST00000578708 105 ntBASIC23.25■■□□□ 1.31
ABCA1O95477 MIR7108-201ENST00000614319 87 ntBASIC23.24■■□□□ 1.31
ABCA1O95477 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
ABCA1O95477 HLA-V-202ENST00000446817 847 ntBASIC23.22■■□□□ 1.31
ABCA1O95477 MLEC-202ENST00000412616 841 ntTSL 3 BASIC23.21■■□□□ 1.31
ABCA1O95477 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC23.21■■□□□ 1.31
ABCA1O95477 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
ABCA1O95477 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
ABCA1O95477 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC23.18■■□□□ 1.3
ABCA1O95477 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.17■■□□□ 1.3
ABCA1O95477 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
ABCA1O95477 AC044849.2-201ENST00000606596 710 ntBASIC23.15■■□□□ 1.3
ABCA1O95477 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
ABCA1O95477 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
ABCA1O95477 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
ABCA1O95477 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
ABCA1O95477 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.12■■□□□ 1.29
ABCA1O95477 AC087741.3-201ENST00000624270 1347 ntBASIC23.11■■□□□ 1.29
ABCA1O95477 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.11■■□□□ 1.29
ABCA1O95477 DUX4L28-201ENST00000623687 678 ntBASIC23.1■■□□□ 1.29
ABCA1O95477 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.09■■□□□ 1.29
ABCA1O95477 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
ABCA1O95477 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
ABCA1O95477 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
ABCA1O95477 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
ABCA1O95477 CHML-205ENST00000638160 705 ntTSL 3 BASIC23.08■■□□□ 1.29
ABCA1O95477 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
ABCA1O95477 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.05■■□□□ 1.28
ABCA1O95477 MIR762-201ENST00000390236 83 ntBASIC23.05■■□□□ 1.28
ABCA1O95477 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
ABCA1O95477 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
ABCA1O95477 AC005559.1-201ENST00000589661 871 ntBASIC23.03■■□□□ 1.28
ABCA1O95477 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.99■■□□□ 1.27
ABCA1O95477 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC22.97■■□□□ 1.27
ABCA1O95477 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
ABCA1O95477 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.96■■□□□ 1.27
ABCA1O95477 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.95■■□□□ 1.26
ABCA1O95477 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.94■■□□□ 1.26
ABCA1O95477 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
ABCA1O95477 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC22.94■■□□□ 1.26
ABCA1O95477 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.93■■□□□ 1.26
ABCA1O95477 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC22.93■■□□□ 1.26
ABCA1O95477 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC22.93■■□□□ 1.26
ABCA1O95477 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.93■■□□□ 1.26
ABCA1O95477 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
ABCA1O95477 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.93■■□□□ 1.26
ABCA1O95477 DENR-202ENST00000455982 1052 ntTSL 5 BASIC22.92■■□□□ 1.26
ABCA1O95477 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
ABCA1O95477 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
ABCA1O95477 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
ABCA1O95477 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
ABCA1O95477 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
ABCA1O95477 BOD1-206ENST00000480951 814 ntTSL 2 BASIC22.91■■□□□ 1.26
ABCA1O95477 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.91■■□□□ 1.26
ABCA1O95477 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
ABCA1O95477 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
ABCA1O95477 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC22.88■■□□□ 1.25
ABCA1O95477 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
ABCA1O95477 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
ABCA1O95477 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC22.87■■□□□ 1.25
ABCA1O95477 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC22.86■■□□□ 1.25
ABCA1O95477 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC22.85■■□□□ 1.25
ABCA1O95477 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
ABCA1O95477 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC22.84■■□□□ 1.25
ABCA1O95477 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
ABCA1O95477 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC22.84■■□□□ 1.25
ABCA1O95477 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC22.83■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms