Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 MLEC-202ENST00000412616 841 ntTSL 3 BASIC13.08□□□□□ -0.32
USH2AO75445 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC13.08□□□□□ -0.32
USH2AO75445 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC13.07□□□□□ -0.32
USH2AO75445 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
USH2AO75445 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC13.06□□□□□ -0.32
USH2AO75445 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
USH2AO75445 HSD17B1P1-201ENST00000590052 955 ntBASIC13.06□□□□□ -0.32
USH2AO75445 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC13.05□□□□□ -0.32
USH2AO75445 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC13.05□□□□□ -0.32
USH2AO75445 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC13.04□□□□□ -0.32
USH2AO75445 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC13.04□□□□□ -0.32
USH2AO75445 DUX4L28-201ENST00000623687 678 ntBASIC13.03□□□□□ -0.32
USH2AO75445 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
USH2AO75445 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
USH2AO75445 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC13.03□□□□□ -0.32
USH2AO75445 MIR4449-201ENST00000578365 66 ntBASIC13.02□□□□□ -0.32
USH2AO75445 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USH2AO75445 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
USH2AO75445 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
USH2AO75445 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC13.01□□□□□ -0.33
USH2AO75445 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
USH2AO75445 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
USH2AO75445 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC12.99□□□□□ -0.33
USH2AO75445 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
USH2AO75445 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
USH2AO75445 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
USH2AO75445 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC12.97□□□□□ -0.33
USH2AO75445 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC12.97□□□□□ -0.33
USH2AO75445 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
USH2AO75445 MIR762-201ENST00000390236 83 ntBASIC12.96□□□□□ -0.33
USH2AO75445 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC12.96□□□□□ -0.33
USH2AO75445 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
USH2AO75445 AC145285.7-201ENST00000614819 1539 ntBASIC12.95□□□□□ -0.34
USH2AO75445 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USH2AO75445 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC12.93□□□□□ -0.34
USH2AO75445 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
USH2AO75445 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USH2AO75445 EBPL-202ENST00000378268 680 ntTSL 3 BASIC12.93□□□□□ -0.34
USH2AO75445 ZNRF2P2-203ENST00000454624 420 ntBASIC12.92□□□□□ -0.34
USH2AO75445 MIR639-201ENST00000384974 98 ntBASIC12.91□□□□□ -0.34
USH2AO75445 AL133380.1-201ENST00000506013 324 ntBASIC12.91□□□□□ -0.34
USH2AO75445 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
USH2AO75445 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC12.9□□□□□ -0.34
USH2AO75445 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
USH2AO75445 BRD4-212ENST00000630599 726 ntTSL 2 BASIC12.89□□□□□ -0.35
USH2AO75445 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
USH2AO75445 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
USH2AO75445 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
USH2AO75445 AC044849.2-201ENST00000606596 710 ntBASIC12.86□□□□□ -0.35
USH2AO75445 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USH2AO75445 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
USH2AO75445 HGH1-207ENST00000628266 258 ntTSL 5 BASIC12.86□□□□□ -0.35
USH2AO75445 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC12.86□□□□□ -0.35
USH2AO75445 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
USH2AO75445 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
USH2AO75445 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
USH2AO75445 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC12.83□□□□□ -0.36
USH2AO75445 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC12.83□□□□□ -0.36
USH2AO75445 MACF1-219ENST00000484793 834 ntTSL 2 BASIC12.83□□□□□ -0.36
USH2AO75445 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
USH2AO75445 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC12.82□□□□□ -0.36
USH2AO75445 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC12.82□□□□□ -0.36
USH2AO75445 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USH2AO75445 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USH2AO75445 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
USH2AO75445 AC005559.1-201ENST00000589661 871 ntBASIC12.81□□□□□ -0.36
USH2AO75445 CHML-205ENST00000638160 705 ntTSL 3 BASIC12.81□□□□□ -0.36
USH2AO75445 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
USH2AO75445 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC12.8□□□□□ -0.36
USH2AO75445 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
USH2AO75445 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC12.8□□□□□ -0.36
USH2AO75445 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
USH2AO75445 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
USH2AO75445 CALM3-209ENST00000597743 577 ntTSL 4 BASIC12.78□□□□□ -0.36
USH2AO75445 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
USH2AO75445 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
USH2AO75445 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC12.77□□□□□ -0.37
USH2AO75445 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC12.76□□□□□ -0.37
USH2AO75445 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
USH2AO75445 MVK-208ENST00000539696 608 ntTSL 5 BASIC12.76□□□□□ -0.37
USH2AO75445 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
USH2AO75445 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC12.75□□□□□ -0.37
USH2AO75445 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
USH2AO75445 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC12.74□□□□□ -0.37
USH2AO75445 RNF166-209ENST00000567844 633 ntTSL 5 BASIC12.73□□□□□ -0.37
USH2AO75445 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
USH2AO75445 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC12.71□□□□□ -0.38
USH2AO75445 MIR3648-2-201ENST00000581792 180 ntBASIC12.71□□□□□ -0.38
USH2AO75445 MIR3648-1-201ENST00000615959 180 ntBASIC12.71□□□□□ -0.38
USH2AO75445 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
USH2AO75445 BOD1-206ENST00000480951 814 ntTSL 2 BASIC12.7□□□□□ -0.38
USH2AO75445 ABHD17AP3-201ENST00000503096 1137 ntBASIC12.7□□□□□ -0.38
USH2AO75445 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
USH2AO75445 CR559946.2-201ENST00000623684 991 ntBASIC12.7□□□□□ -0.38
USH2AO75445 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC12.7□□□□□ -0.38
USH2AO75445 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC12.7□□□□□ -0.38
USH2AO75445 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC12.7□□□□□ -0.38
USH2AO75445 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
USH2AO75445 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
USH2AO75445 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms