Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.36■■■□□ 2.13
CCDC163A0A0D9SF12 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
CCDC163A0A0D9SF12 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
CCDC163A0A0D9SF12 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
CCDC163A0A0D9SF12 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
CCDC163A0A0D9SF12 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.35■■■□□ 2.13
CCDC163A0A0D9SF12 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCDC163A0A0D9SF12 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.33■■■□□ 2.13
CCDC163A0A0D9SF12 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
CCDC163A0A0D9SF12 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.3■■■□□ 2.12
CCDC163A0A0D9SF12 MIR3665-201ENST00000578708 105 ntBASIC28.29■■■□□ 2.12
CCDC163A0A0D9SF12 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCDC163A0A0D9SF12 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CCDC163A0A0D9SF12 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.25■■■□□ 2.11
CCDC163A0A0D9SF12 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.24■■■□□ 2.11
CCDC163A0A0D9SF12 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC163A0A0D9SF12 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.24■■■□□ 2.11
CCDC163A0A0D9SF12 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CCDC163A0A0D9SF12 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.22■■■□□ 2.11
CCDC163A0A0D9SF12 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
CCDC163A0A0D9SF12 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC163A0A0D9SF12 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
CCDC163A0A0D9SF12 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.2■■■□□ 2.1
CCDC163A0A0D9SF12 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.19■■■□□ 2.1
CCDC163A0A0D9SF12 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CCDC163A0A0D9SF12 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.19■■■□□ 2.1
CCDC163A0A0D9SF12 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
CCDC163A0A0D9SF12 ABHD17AP4-201ENST00000411545 909 ntBASIC28.17■■■□□ 2.1
CCDC163A0A0D9SF12 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCDC163A0A0D9SF12 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.16■■■□□ 2.1
CCDC163A0A0D9SF12 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.16■■■□□ 2.1
CCDC163A0A0D9SF12 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.14■■■□□ 2.1
CCDC163A0A0D9SF12 MIR7108-201ENST00000614319 87 ntBASIC28.13■■■□□ 2.09
CCDC163A0A0D9SF12 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.12■■■□□ 2.09
CCDC163A0A0D9SF12 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC163A0A0D9SF12 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
CCDC163A0A0D9SF12 AC087741.3-201ENST00000624270 1347 ntBASIC28.11■■■□□ 2.09
CCDC163A0A0D9SF12 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.08■■■□□ 2.09
CCDC163A0A0D9SF12 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CCDC163A0A0D9SF12 DUX4L28-201ENST00000623687 678 ntBASIC28.04■■■□□ 2.08
CCDC163A0A0D9SF12 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.03■■■□□ 2.08
CCDC163A0A0D9SF12 AC044849.2-201ENST00000606596 710 ntBASIC28.03■■■□□ 2.08
CCDC163A0A0D9SF12 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
CCDC163A0A0D9SF12 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.02■■■□□ 2.08
CCDC163A0A0D9SF12 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
CCDC163A0A0D9SF12 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
CCDC163A0A0D9SF12 MIR762-201ENST00000390236 83 ntBASIC27.99■■■□□ 2.07
CCDC163A0A0D9SF12 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
CCDC163A0A0D9SF12 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.98■■■□□ 2.07
CCDC163A0A0D9SF12 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.97■■■□□ 2.07
CCDC163A0A0D9SF12 AC005559.1-201ENST00000589661 871 ntBASIC27.95■■■□□ 2.06
CCDC163A0A0D9SF12 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC27.95■■■□□ 2.06
CCDC163A0A0D9SF12 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.94■■■□□ 2.06
CCDC163A0A0D9SF12 PVT1-219ENST00000523427 938 ntTSL 3 BASIC27.91■■■□□ 2.06
CCDC163A0A0D9SF12 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
CCDC163A0A0D9SF12 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC27.9■■■□□ 2.06
CCDC163A0A0D9SF12 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC27.89■■■□□ 2.06
CCDC163A0A0D9SF12 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC27.87■■■□□ 2.05
CCDC163A0A0D9SF12 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
CCDC163A0A0D9SF12 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC27.87■■■□□ 2.05
CCDC163A0A0D9SF12 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC27.86■■■□□ 2.05
CCDC163A0A0D9SF12 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
CCDC163A0A0D9SF12 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC27.85■■■□□ 2.05
CCDC163A0A0D9SF12 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC163A0A0D9SF12 HLA-V-202ENST00000446817 847 ntBASIC27.84■■■□□ 2.05
CCDC163A0A0D9SF12 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
CCDC163A0A0D9SF12 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC27.83■■■□□ 2.05
CCDC163A0A0D9SF12 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC27.83■■■□□ 2.05
CCDC163A0A0D9SF12 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.83■■■□□ 2.05
CCDC163A0A0D9SF12 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC27.83■■■□□ 2.05
CCDC163A0A0D9SF12 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC27.83■■■□□ 2.05
CCDC163A0A0D9SF12 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC27.83■■■□□ 2.05
CCDC163A0A0D9SF12 MBP-237ENST00000579129 1052 ntTSL 5 BASIC27.82■■■□□ 2.04
CCDC163A0A0D9SF12 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.8■■■□□ 2.04
CCDC163A0A0D9SF12 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC163A0A0D9SF12 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
CCDC163A0A0D9SF12 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
CCDC163A0A0D9SF12 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC27.77■■■□□ 2.04
CCDC163A0A0D9SF12 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 BOD1-206ENST00000480951 814 ntTSL 2 BASIC27.76■■■□□ 2.03
CCDC163A0A0D9SF12 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC27.75■■■□□ 2.03
CCDC163A0A0D9SF12 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
CCDC163A0A0D9SF12 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC27.74■■■□□ 2.03
CCDC163A0A0D9SF12 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC163A0A0D9SF12 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
CCDC163A0A0D9SF12 ZNRF2P2-203ENST00000454624 420 ntBASIC27.72■■■□□ 2.03
CCDC163A0A0D9SF12 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
CCDC163A0A0D9SF12 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
CCDC163A0A0D9SF12 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.69■■■□□ 2.02
CCDC163A0A0D9SF12 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
CCDC163A0A0D9SF12 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC27.68■■■□□ 2.02
CCDC163A0A0D9SF12 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC27.64■■■□□ 2.02
CCDC163A0A0D9SF12 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
CCDC163A0A0D9SF12 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CCDC163A0A0D9SF12 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC27.62■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms