Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC22.8■■□□□ 1.24
TRAV40A0A0B4J280 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC22.79■■□□□ 1.24
TRAV40A0A0B4J280 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.77■■□□□ 1.24
TRAV40A0A0B4J280 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
TRAV40A0A0B4J280 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
TRAV40A0A0B4J280 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRAV40A0A0B4J280 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC22.75■■□□□ 1.23
TRAV40A0A0B4J280 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRAV40A0A0B4J280 SUZ12P1-203ENST00000578195 985 ntBASIC22.75■■□□□ 1.23
TRAV40A0A0B4J280 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRAV40A0A0B4J280 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRAV40A0A0B4J280 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC22.74■■□□□ 1.23
TRAV40A0A0B4J280 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
TRAV40A0A0B4J280 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
TRAV40A0A0B4J280 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC22.7■■□□□ 1.22
TRAV40A0A0B4J280 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
TRAV40A0A0B4J280 AL133380.1-201ENST00000506013 324 ntBASIC22.69■■□□□ 1.22
TRAV40A0A0B4J280 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC22.67■■□□□ 1.22
TRAV40A0A0B4J280 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TRAV40A0A0B4J280 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
TRAV40A0A0B4J280 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC22.64■■□□□ 1.22
TRAV40A0A0B4J280 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAV40A0A0B4J280 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
TRAV40A0A0B4J280 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
TRAV40A0A0B4J280 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
TRAV40A0A0B4J280 CAHM-201ENST00000604200 896 ntBASIC22.61■■□□□ 1.21
TRAV40A0A0B4J280 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.6■■□□□ 1.21
TRAV40A0A0B4J280 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TRAV40A0A0B4J280 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
TRAV40A0A0B4J280 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TRAV40A0A0B4J280 AL391121.1-201ENST00000607967 1349 ntBASIC22.58■■□□□ 1.21
TRAV40A0A0B4J280 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC22.58■■□□□ 1.21
TRAV40A0A0B4J280 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
TRAV40A0A0B4J280 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV40A0A0B4J280 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TRAV40A0A0B4J280 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAV40A0A0B4J280 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TRAV40A0A0B4J280 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
TRAV40A0A0B4J280 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
TRAV40A0A0B4J280 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
TRAV40A0A0B4J280 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRAV40A0A0B4J280 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TRAV40A0A0B4J280 EBPL-202ENST00000378268 680 ntTSL 3 BASIC22.49■■□□□ 1.19
TRAV40A0A0B4J280 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC22.49■■□□□ 1.19
TRAV40A0A0B4J280 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
TRAV40A0A0B4J280 RPS2P35-201ENST00000443417 897 ntBASIC22.47■■□□□ 1.19
TRAV40A0A0B4J280 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
TRAV40A0A0B4J280 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TRAV40A0A0B4J280 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC22.46■■□□□ 1.19
TRAV40A0A0B4J280 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
TRAV40A0A0B4J280 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV40A0A0B4J280 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.45■■□□□ 1.18
TRAV40A0A0B4J280 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TRAV40A0A0B4J280 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC22.43■■□□□ 1.18
TRAV40A0A0B4J280 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
TRAV40A0A0B4J280 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
TRAV40A0A0B4J280 HNRNPLP2-201ENST00000568980 1570 ntBASIC22.4■■□□□ 1.18
TRAV40A0A0B4J280 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TRAV40A0A0B4J280 AL162393.1-201ENST00000437852 946 ntBASIC22.39■■□□□ 1.17
TRAV40A0A0B4J280 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC22.38■■□□□ 1.17
TRAV40A0A0B4J280 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC22.38■■□□□ 1.17
TRAV40A0A0B4J280 AP006261.1-201ENST00000584783 668 ntBASIC22.38■■□□□ 1.17
TRAV40A0A0B4J280 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV40A0A0B4J280 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRAV40A0A0B4J280 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRAV40A0A0B4J280 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRAV40A0A0B4J280 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TRAV40A0A0B4J280 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV40A0A0B4J280 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV40A0A0B4J280 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV40A0A0B4J280 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC22.33■■□□□ 1.17
TRAV40A0A0B4J280 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV40A0A0B4J280 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC22.32■■□□□ 1.16
TRAV40A0A0B4J280 NRG1-221ENST00000614767 762 ntTSL 5 BASIC22.32■■□□□ 1.16
TRAV40A0A0B4J280 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV40A0A0B4J280 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV40A0A0B4J280 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV40A0A0B4J280 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV40A0A0B4J280 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC22.3■■□□□ 1.16
TRAV40A0A0B4J280 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV40A0A0B4J280 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV40A0A0B4J280 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV40A0A0B4J280 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TRAV40A0A0B4J280 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC22.27■■□□□ 1.16
TRAV40A0A0B4J280 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TRAV40A0A0B4J280 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
TRAV40A0A0B4J280 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV40A0A0B4J280 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC22.26■■□□□ 1.15
TRAV40A0A0B4J280 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV40A0A0B4J280 WASH5P-204ENST00000632292 975 ntBASIC22.26■■□□□ 1.15
TRAV40A0A0B4J280 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TRAV40A0A0B4J280 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC22.25■■□□□ 1.15
TRAV40A0A0B4J280 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TRAV40A0A0B4J280 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TRAV40A0A0B4J280 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC22.24■■□□□ 1.15
TRAV40A0A0B4J280 MIR3665-201ENST00000578708 105 ntBASIC22.24■■□□□ 1.15
TRAV40A0A0B4J280 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV40A0A0B4J280 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TRAV40A0A0B4J280 MIR762-201ENST00000390236 83 ntBASIC22.23■■□□□ 1.15
TRAV40A0A0B4J280 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms