Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
HMGCS2P54868 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGCS2P54868 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC26.22■■□□□ 1.79
HMGCS2P54868 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC26.22■■□□□ 1.79
HMGCS2P54868 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
HMGCS2P54868 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26.21■■□□□ 1.79
HMGCS2P54868 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC26.21■■□□□ 1.79
HMGCS2P54868 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
HMGCS2P54868 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
HMGCS2P54868 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC26.21■■□□□ 1.79
HMGCS2P54868 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC26.21■■□□□ 1.79
HMGCS2P54868 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 KRT18P5-201ENST00000436075 1291 ntBASIC26.21■■□□□ 1.79
HMGCS2P54868 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC26.21■■□□□ 1.79
HMGCS2P54868 IGHV3-19-201ENST00000521488 291 ntBASIC26.21■■□□□ 1.79
HMGCS2P54868 AC022517.1-201ENST00000592429 346 ntBASIC26.21■■□□□ 1.79
HMGCS2P54868 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
HMGCS2P54868 AC133637.1-201ENST00000624115 1537 ntBASIC26.2■■□□□ 1.79
HMGCS2P54868 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.2■■□□□ 1.78
HMGCS2P54868 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HMGCS2P54868 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HMGCS2P54868 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC26.2■■□□□ 1.78
HMGCS2P54868 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC26.2■■□□□ 1.78
HMGCS2P54868 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
HMGCS2P54868 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HMGCS2P54868 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L2-201ENST00000561772 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC26.2■■□□□ 1.78
HMGCS2P54868 MIR6084-201ENST00000622012 110 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L6-201ENST00000626483 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L1-201ENST00000627662 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L8-201ENST00000629013 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L3-201ENST00000630187 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L7-201ENST00000630678 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 DUX4L5-201ENST00000630834 1275 ntBASIC26.2■■□□□ 1.78
HMGCS2P54868 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC26.2■■□□□ 1.78
HMGCS2P54868 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
HMGCS2P54868 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
HMGCS2P54868 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC26.19■■□□□ 1.78
HMGCS2P54868 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.19■■□□□ 1.78
HMGCS2P54868 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.19■■□□□ 1.78
HMGCS2P54868 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC26.19■■□□□ 1.78
HMGCS2P54868 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 RAB43-208ENST00000615093 783 ntTSL 5 BASIC26.19■■□□□ 1.78
HMGCS2P54868 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC26.19■■□□□ 1.78
HMGCS2P54868 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
HMGCS2P54868 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
HMGCS2P54868 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.78
HMGCS2P54868 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC26.18■■□□□ 1.78
HMGCS2P54868 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
HMGCS2P54868 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
HMGCS2P54868 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
HMGCS2P54868 AL358852.1-201ENST00000623174 1268 ntBASIC26.18■■□□□ 1.78
HMGCS2P54868 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
HMGCS2P54868 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
HMGCS2P54868 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HMGCS2P54868 MIR572-201ENST00000384983 95 ntBASIC26.17■■□□□ 1.78
HMGCS2P54868 AC027612.3-201ENST00000413684 1047 ntBASIC26.17■■□□□ 1.78
HMGCS2P54868 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HMGCS2P54868 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC26.17■■□□□ 1.78
HMGCS2P54868 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
HMGCS2P54868 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
HMGCS2P54868 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
HMGCS2P54868 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HMGCS2P54868 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HMGCS2P54868 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HMGCS2P54868 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
HMGCS2P54868 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC26.16■■□□□ 1.78
HMGCS2P54868 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC26.16■■□□□ 1.78
HMGCS2P54868 RARRES2P11-201ENST00000635158 484 ntBASIC26.16■■□□□ 1.78
HMGCS2P54868 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
HMGCS2P54868 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
HMGCS2P54868 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.15■■□□□ 1.78
HMGCS2P54868 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
HMGCS2P54868 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
HMGCS2P54868 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.15■■□□□ 1.78
HMGCS2P54868 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC26.15■■□□□ 1.78
HMGCS2P54868 AC090192.1-201ENST00000517740 490 ntBASIC26.15■■□□□ 1.78
HMGCS2P54868 AC010525.1-201ENST00000585559 441 ntBASIC26.15■■□□□ 1.78
HMGCS2P54868 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
HMGCS2P54868 AP003733.4-201ENST00000623785 1697 ntBASIC26.15■■□□□ 1.78
HMGCS2P54868 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC26.15■■□□□ 1.78
HMGCS2P54868 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
HMGCS2P54868 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
HMGCS2P54868 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
HMGCS2P54868 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC26.14■■□□□ 1.78
HMGCS2P54868 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
HMGCS2P54868 AC012414.1-201ENST00000556676 535 ntBASIC26.14■■□□□ 1.78
HMGCS2P54868 AL499627.2-201ENST00000606283 725 ntBASIC26.14■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms