Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC24.44■■□□□ 1.5
TTC3P53804 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.44■■□□□ 1.5
TTC3P53804 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
TTC3P53804 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
TTC3P53804 YBX1P1-201ENST00000445822 960 ntBASIC24.44■■□□□ 1.5
TTC3P53804 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.44■■□□□ 1.5
TTC3P53804 AL358852.1-201ENST00000623174 1268 ntBASIC24.44■■□□□ 1.5
TTC3P53804 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
TTC3P53804 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
TTC3P53804 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC24.42■■□□□ 1.5
TTC3P53804 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC24.42■■□□□ 1.5
TTC3P53804 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TTC3P53804 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.42■■□□□ 1.5
TTC3P53804 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.42■■□□□ 1.5
TTC3P53804 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TTC3P53804 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
TTC3P53804 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
TTC3P53804 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
TTC3P53804 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC24.42■■□□□ 1.5
TTC3P53804 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TTC3P53804 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
TTC3P53804 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC3P53804 IGHV3-19-201ENST00000521488 291 ntBASIC24.42■■□□□ 1.5
TTC3P53804 AC022517.1-201ENST00000592429 346 ntBASIC24.42■■□□□ 1.5
TTC3P53804 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.42■■□□□ 1.5
TTC3P53804 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.42■■□□□ 1.5
TTC3P53804 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TTC3P53804 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
TTC3P53804 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC24.41■■□□□ 1.5
TTC3P53804 AC022211.4-201ENST00000625094 2161 ntBASIC24.41■■□□□ 1.5
TTC3P53804 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TTC3P53804 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.41■■□□□ 1.5
TTC3P53804 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TTC3P53804 AC123595.1-201ENST00000440769 1046 ntBASIC24.41■■□□□ 1.5
TTC3P53804 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TTC3P53804 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
TTC3P53804 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
TTC3P53804 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TTC3P53804 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
TTC3P53804 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.4■■□□□ 1.5
TTC3P53804 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.4■■□□□ 1.5
TTC3P53804 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
TTC3P53804 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
TTC3P53804 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.4■■□□□ 1.5
TTC3P53804 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC24.4■■□□□ 1.5
TTC3P53804 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.4■■□□□ 1.5
TTC3P53804 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.4■■□□□ 1.5
TTC3P53804 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
TTC3P53804 AC092437.1-201ENST00000624794 1048 ntBASIC24.4■■□□□ 1.5
TTC3P53804 RARRES2P11-201ENST00000635158 484 ntBASIC24.4■■□□□ 1.5
TTC3P53804 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TTC3P53804 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
TTC3P53804 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC24.39■■□□□ 1.5
TTC3P53804 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.39■■□□□ 1.5
TTC3P53804 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
TTC3P53804 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
TTC3P53804 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC24.39■■□□□ 1.5
TTC3P53804 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
TTC3P53804 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
TTC3P53804 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TTC3P53804 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
TTC3P53804 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.39■■□□□ 1.49
TTC3P53804 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
TTC3P53804 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
TTC3P53804 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.39■■□□□ 1.49
TTC3P53804 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.39■■□□□ 1.49
TTC3P53804 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.38■■□□□ 1.49
TTC3P53804 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
TTC3P53804 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
TTC3P53804 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC24.38■■□□□ 1.49
TTC3P53804 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 AC010525.1-201ENST00000585559 441 ntBASIC24.37■■□□□ 1.49
TTC3P53804 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.37■■□□□ 1.49
TTC3P53804 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC24.37■■□□□ 1.49
TTC3P53804 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC24.37■■□□□ 1.49
TTC3P53804 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC24.37■■□□□ 1.49
TTC3P53804 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC24.37■■□□□ 1.49
TTC3P53804 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
TTC3P53804 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
TTC3P53804 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.36■■□□□ 1.49
TTC3P53804 AC133637.1-201ENST00000624115 1537 ntBASIC24.36■■□□□ 1.49
TTC3P53804 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
TTC3P53804 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
TTC3P53804 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.36■■□□□ 1.49
TTC3P53804 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
TTC3P53804 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
TTC3P53804 AC020928.2-201ENST00000588717 2197 ntBASIC24.36■■□□□ 1.49
TTC3P53804 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
TTC3P53804 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
TTC3P53804 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.35■■□□□ 1.49
TTC3P53804 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
TTC3P53804 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
TTC3P53804 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC24.35■■□□□ 1.49
TTC3P53804 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC24.35■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms