RNA–Protein interactions for RNA: ENST00000532029.6

LRRK1-208, Transcript of leucine rich repeat kinase 1, humanhuman

TSL 1 (best) BASIC

Gene LRRK1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1-208ENST00000532029 NISCHQ9Y2I1 1504 aa53.22■■■■■ 6.11
LRRK1-208ENST00000532029 CCDC180Q9P1Z9 1646 aa47.12■■■■■ 5.13
LRRK1-208ENST00000532029 ABCC9O60706 1549 aa45.72■■■■■ 4.91
LRRK1-208ENST00000532029 ZCCHC6Q5VYS8 1495 aaKnown RBP44.42■■■■■ 4.7
LRRK1-208ENST00000532029 DCAF8L2P0C7V8 631 aa44.38■■■■■ 4.7
LRRK1-208ENST00000532029 NACADO15069 1562 aa44.21■■■■■ 4.67
LRRK1-208ENST00000532029 RB1CC1Q8TDY2 1594 aa44.18■■■■■ 4.66
LRRK1-208ENST00000532029 MYO15BQ96JP2 1530 aa44.06■■■■■ 4.64
LRRK1-208ENST00000532029 DCAF1Q9Y4B6 1507 aa44.04■■■■■ 4.64
LRRK1-208ENST00000532029 UNC13AQ9UPW8 1703 aa43.1■■■■■ 4.49
LRRK1-208ENST00000532029 SCRIBQ14160 1630 aa43.06■■■■■ 4.48
LRRK1-208ENST00000532029 PABPN1Q86U42 306 aaKnown RBP eCLIP42.8■■■■■ 4.44
LRRK1-208ENST00000532029 BICRAQ9NZM4 1560 aa42.76■■■■■ 4.44
LRRK1-208ENST00000532029 SHROOM4Q9ULL8 1493 aa42.4■■■■■ 4.38
LRRK1-208ENST00000532029 DNAJC5BQ9UF47 199 aa42.21■■■■■ 4.35
LRRK1-208ENST00000532029 EIF4G1Q04637 1599 aaKnown RBP41.63■■■■■ 4.26
LRRK1-208ENST00000532029 CECR2Q9BXF3 1484 aa41.4■■■■■ 4.22
LRRK1-208ENST00000532029 CC2D2AQ9P2K1 1620 aa41.36■■■■■ 4.21
LRRK1-208ENST00000532029 BAZ1AQ9NRL2 1556 aaPredicted RBP41.24■■■■■ 4.19
LRRK1-208ENST00000532029 SMARCA4P51532 1647 aa41.21■■■■■ 4.19
LRRK1-208ENST00000532029 MROH2BQ7Z745 1585 aa41.02■■■■■ 4.16
LRRK1-208ENST00000532029 ATAD2BQ9ULI0 1458 aa40.87■■■■■ 4.13
LRRK1-208ENST00000532029 SMARCA2P51531 1590 aa40.86■■■■■ 4.13
LRRK1-208ENST00000532029 NCAPD3P42695 1498 aa40.77■■■■■ 4.12
LRRK1-208ENST00000532029 PEG3Q9GZU2 1588 aa40.76■■■■■ 4.12
LRRK1-208ENST00000532029 RSF1Q96T23 1441 aaPredicted RBP40.7■■■■■ 4.11
LRRK1-208ENST00000532029 HMGXB3Q12766 1538 aa40.62■■■■■ 4.09
LRRK1-208ENST00000532029 WIZO95785 1651 aa40.59■■■■■ 4.09
LRRK1-208ENST00000532029 BAZ1BQ9UIG0 1483 aaKnown RBP40.59■■■■■ 4.09
LRRK1-208ENST00000532029 TOP2AP11388 1531 aaKnown RBP40.21■■■■■ 4.03
LRRK1-208ENST00000532029 SUPT5HO00267 1087 aaKnown RBP40.08■■■■■ 4.01
LRRK1-208ENST00000532029 CCDC88BA6NC98 1476 aa39.73■■■■□ 3.95
LRRK1-208ENST00000532029 NESP48681 1621 aa39.67■■■■□ 3.94
LRRK1-208ENST00000532029 LAMC3Q9Y6N6 1575 aa39.65■■■■□ 3.94
LRRK1-208ENST00000532029 CADPSQ9ULU8 1353 aa39.63■■■■□ 3.93
LRRK1-208ENST00000532029 CFTRP13569 1480 aa39.47■■■■□ 3.91
LRRK1-208ENST00000532029 ERCC6Q03468 1493 aa39.42■■■■□ 3.9
LRRK1-208ENST00000532029 PDS5BQ9NTI5 1447 aa39.4■■■■□ 3.9
LRRK1-208ENST00000532029 KIF21AQ7Z4S6 1674 aa39.21■■■■□ 3.87
LRRK1-208ENST00000532029 PRDM2Q13029 1718 aa39.2■■■■□ 3.87
LRRK1-208ENST00000532029 FANCD2Q9BXW9 1451 aa39.18■■■■□ 3.86
LRRK1-208ENST00000532029 CEP164Q9UPV0 1460 aa39.11■■■■□ 3.85
LRRK1-208ENST00000532029 THOC2Q8NI27 1593 aaKnown RBP38.96■■■■□ 3.83
LRRK1-208ENST00000532029 MRC2Q9UBG0 1479 aa38.96■■■■□ 3.83
LRRK1-208ENST00000532029 CUX2O14529 1486 aa38.85■■■■□ 3.81
LRRK1-208ENST00000532029 WDR62O43379 1518 aa38.79■■■■□ 3.8
LRRK1-208ENST00000532029 URB2Q14146 1524 aaKnown RBP38.74■■■■□ 3.79
LRRK1-208ENST00000532029 ABCC8Q09428 1581 aa38.65■■■■□ 3.78
LRRK1-208ENST00000532029 TOPBP1Q92547 1522 aa38.6■■■■□ 3.77
LRRK1-208ENST00000532029 DNMBPQ6XZF7 1577 aa38.6■■■■□ 3.77
LRRK1-208ENST00000532029 CUX1P39880 1505 aa38.45■■■■□ 3.75
LRRK1-208ENST00000532029 WRNQ14191 1432 aaPredicted RBP eCLIP38.4■■■■□ 3.74
LRRK1-208ENST00000532029 POLA1P09884 1462 aaPredicted RBP38.3■■■■□ 3.72
LRRK1-208ENST00000532029 FGD5Q6ZNL6 1462 aa38.28■■■■□ 3.72
LRRK1-208ENST00000532029 IFT140Q96RY7 1462 aa38.27■■■■□ 3.72
LRRK1-208ENST00000532029 SYNJ1O43426 1573 aa38.26■■■■□ 3.72
LRRK1-208ENST00000532029 TOP2BQ02880 1626 aa38.24■■■■□ 3.71
LRRK1-208ENST00000532029 BIVM-ERCC5R4GMW8 1640 aa38.23■■■■□ 3.71
LRRK1-208ENST00000532029 SOGA1O94964 1423 aa38.17■■■■□ 3.7
LRRK1-208ENST00000532029 DNAJC5Q9H3Z4 198 aa38.15■■■■□ 3.7
LRRK1-208ENST00000532029 RAD54L2Q9Y4B4 1467 aa38.13■■■■□ 3.69
LRRK1-208ENST00000532029 TARBP1Q13395 1621 aaKnown RBP38.12■■■■□ 3.69
LRRK1-208ENST00000532029 ZNF608Q9ULD9 1512 aaPredicted RBP38.02■■■■□ 3.68
LRRK1-208ENST00000532029 ABCA10Q8WWZ4 1543 aa37.92■■■■□ 3.66
LRRK1-208ENST00000532029 EIF4G3O43432 1585 aaKnown RBP37.91■■■■□ 3.66
LRRK1-208ENST00000532029 WDR97A6NE52 1622 aa37.9■■■■□ 3.66
LRRK1-208ENST00000532029 TDRD9Q8NDG6 1382 aaKnown RBP37.89■■■■□ 3.66
LRRK1-208ENST00000532029 AQRO60306 1485 aaKnown RBP eCLIP37.88■■■■□ 3.65
LRRK1-208ENST00000532029 TRIM41Q8WV44 630 aa37.83■■■■□ 3.65
LRRK1-208ENST00000532029 GAPVD1Q14C86 1478 aa37.73■■■■□ 3.63
LRRK1-208ENST00000532029 ABCA5Q8WWZ7 1642 aa37.72■■■■□ 3.63
LRRK1-208ENST00000532029 GRIN2BQ13224 1484 aa37.68■■■■□ 3.62
LRRK1-208ENST00000532029 PBRM1Q86U86 1689 aa37.61■■■■□ 3.61
LRRK1-208ENST00000532029 CHIC1Q5VXU3 224 aa37.61■■■■□ 3.61
LRRK1-208ENST00000532029 KIF27Q86VH2 1401 aa37.59■■■■□ 3.61
LRRK1-208ENST00000532029 SNAPC4Q5SXM2 1469 aa37.56■■■■□ 3.6
LRRK1-208ENST00000532029 MAGI1Q96QZ7 1491 aaPredicted RBP37.52■■■■□ 3.6
LRRK1-208ENST00000532029 ERICH3Q5RHP9 1530 aa37.48■■■■□ 3.59
LRRK1-208ENST00000532029 FBLN2P98095 1184 aa37.41■■■■□ 3.58
LRRK1-208ENST00000532029 SYNJ2O15056 1496 aa37.37■■■■□ 3.57
LRRK1-208ENST00000532029 CHMP7Q8WUX9 453 aaPredicted RBP37.36■■■■□ 3.57
LRRK1-208ENST00000532029 ADAMTS12P58397 1594 aa37.34■■■■□ 3.57
LRRK1-208ENST00000532029 CHD1O14646 1710 aa37.34■■■■□ 3.57
LRRK1-208ENST00000532029 IGF1RP08069 1367 aa37.33■■■■□ 3.57
LRRK1-208ENST00000532029 RUSC2Q8N2Y8 1516 aa37.32■■■■□ 3.57
LRRK1-208ENST00000532029 FHAD1B1AJZ9 1412 aa37.32■■■■□ 3.56
LRRK1-208ENST00000532029 OSCARQ8IYS5 282 aa37.3■■■■□ 3.56
LRRK1-208ENST00000532029 CUL7Q14999 1698 aa37.24■■■■□ 3.55
LRRK1-208ENST00000532029 GRIN2AQ12879 1464 aa37.18■■■■□ 3.54
LRRK1-208ENST00000532029 EEA1Q15075 1411 aa37.16■■■■□ 3.54
LRRK1-208ENST00000532029 CARMIL1Q5VZK9 1371 aa37.16■■■■□ 3.54
LRRK1-208ENST00000532029 FAM9AQ8IZU1 332 aaPredicted RBP37.05■■■■□ 3.52
LRRK1-208ENST00000532029 CSRNP3Q8WYN3 585 aa37.04■■■■□ 3.52
LRRK1-208ENST00000532029 NUP160Q12769 1436 aa36.98■■■■□ 3.51
LRRK1-208ENST00000532029 RAPGEF2Q9Y4G8 1499 aa36.98■■■■□ 3.51
LRRK1-208ENST00000532029 CEP170Q5SW79 1584 aa36.95■■■■□ 3.51
LRRK1-208ENST00000532029 CLASP1Q7Z460 1538 aa36.94■■■■□ 3.5
LRRK1-208ENST00000532029 PRXQ9BXM0 1461 aa36.92■■■■□ 3.5
LRRK1-208ENST00000532029 KIAA0586Q9BVV6 1533 aa36.75■■■■□ 3.47
LRRK1-208ENST00000532029 KIF21BO75037 1637 aa36.7■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms