Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC31.21■■■□□ 2.59
KRT28Q7Z3Y7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
KRT28Q7Z3Y7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC31.21■■■□□ 2.59
KRT28Q7Z3Y7 MIR6084-201ENST00000622012 110 ntBASIC31.21■■■□□ 2.59
KRT28Q7Z3Y7 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
KRT28Q7Z3Y7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
KRT28Q7Z3Y7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC31.2■■■□□ 2.59
KRT28Q7Z3Y7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC31.2■■■□□ 2.59
KRT28Q7Z3Y7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC31.2■■■□□ 2.59
KRT28Q7Z3Y7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC31.2■■■□□ 2.59
KRT28Q7Z3Y7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC31.2■■■□□ 2.59
KRT28Q7Z3Y7 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
KRT28Q7Z3Y7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.18■■■□□ 2.58
KRT28Q7Z3Y7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC31.18■■■□□ 2.58
KRT28Q7Z3Y7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC31.18■■■□□ 2.58
KRT28Q7Z3Y7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC31.18■■■□□ 2.58
KRT28Q7Z3Y7 MIR6089-201ENST00000616698 64 ntBASIC31.18■■■□□ 2.58
KRT28Q7Z3Y7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 CCDC92B-201ENST00000575506 885 ntBASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
KRT28Q7Z3Y7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC31.16■■■□□ 2.58
KRT28Q7Z3Y7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.16■■■□□ 2.58
KRT28Q7Z3Y7 MIR572-201ENST00000384983 95 ntBASIC31.16■■■□□ 2.58
KRT28Q7Z3Y7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC31.16■■■□□ 2.58
KRT28Q7Z3Y7 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC31.16■■■□□ 2.58
KRT28Q7Z3Y7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC31.16■■■□□ 2.58
KRT28Q7Z3Y7 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 GXYLT1P2-201ENST00000433312 1230 ntBASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
KRT28Q7Z3Y7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
KRT28Q7Z3Y7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.14■■■□□ 2.58
KRT28Q7Z3Y7 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
KRT28Q7Z3Y7 IGHV3-19-201ENST00000521488 291 ntBASIC31.14■■■□□ 2.58
KRT28Q7Z3Y7 AC012414.1-201ENST00000556676 535 ntBASIC31.14■■■□□ 2.58
KRT28Q7Z3Y7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC31.14■■■□□ 2.58
KRT28Q7Z3Y7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.14■■■□□ 2.57
KRT28Q7Z3Y7 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 NTF6G-201ENST00000591094 616 ntBASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
KRT28Q7Z3Y7 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31.12■■■□□ 2.57
KRT28Q7Z3Y7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
KRT28Q7Z3Y7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
KRT28Q7Z3Y7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC31.11■■■□□ 2.57
KRT28Q7Z3Y7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC31.11■■■□□ 2.57
KRT28Q7Z3Y7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
KRT28Q7Z3Y7 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 AC092803.2-201ENST00000564287 1899 ntBASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC31.1■■■□□ 2.57
KRT28Q7Z3Y7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
KRT28Q7Z3Y7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC31.09■■■□□ 2.57
KRT28Q7Z3Y7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
KRT28Q7Z3Y7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC31.09■■■□□ 2.57
KRT28Q7Z3Y7 AL354811.1-201ENST00000610286 706 ntBASIC31.09■■■□□ 2.57
KRT28Q7Z3Y7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms