RNA–Protein interactions for RNA: ENST00000333213.10

TSEN54-201, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSEN54, Length 1,944 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-201ENST00000333213 NISCHQ9Y2I1 1504 aa53.68■■■■■ 6.18
TSEN54-201ENST00000333213 CCDC180Q9P1Z9 1646 aa46.91■■■■■ 5.1
TSEN54-201ENST00000333213 ZCCHC6Q5VYS8 1495 aaKnown RBP45.02■■■■■ 4.8
TSEN54-201ENST00000333213 ABCC9O60706 1549 aa44.77■■■■■ 4.76
TSEN54-201ENST00000333213 DCAF8L2P0C7V8 631 aa44.43■■■■■ 4.7
TSEN54-201ENST00000333213 DCAF1Q9Y4B6 1507 aa44.34■■■■■ 4.69
TSEN54-201ENST00000333213 MYO15BQ96JP2 1530 aa43.96■■■■■ 4.63
TSEN54-201ENST00000333213 NACADO15069 1562 aa43.79■■■■■ 4.6
TSEN54-201ENST00000333213 SHROOM4Q9ULL8 1493 aa43.55■■■■■ 4.56
TSEN54-201ENST00000333213 RB1CC1Q8TDY2 1594 aa43.49■■■■■ 4.55
TSEN54-201ENST00000333213 SCRIBQ14160 1630 aa43.14■■■■■ 4.5
TSEN54-201ENST00000333213 UNC13AQ9UPW8 1703 aa42.67■■■■■ 4.42
TSEN54-201ENST00000333213 BICRAQ9NZM4 1560 aa42.3■■■■■ 4.36
TSEN54-201ENST00000333213 PABPN1Q86U42 306 aaKnown RBP eCLIP42.18■■■■■ 4.34
TSEN54-201ENST00000333213 CECR2Q9BXF3 1484 aa41.8■■■■■ 4.28
TSEN54-201ENST00000333213 SUPT5HO00267 1087 aaKnown RBP41.69■■■■■ 4.26
TSEN54-201ENST00000333213 RSF1Q96T23 1441 aaPredicted RBP41.52■■■■■ 4.24
TSEN54-201ENST00000333213 MROH2BQ7Z745 1585 aa41.49■■■■■ 4.23
TSEN54-201ENST00000333213 BAZ1AQ9NRL2 1556 aaPredicted RBP41.44■■■■■ 4.22
TSEN54-201ENST00000333213 SMARCA4P51532 1647 aa41.33■■■■■ 4.21
TSEN54-201ENST00000333213 WIZO95785 1651 aa41.11■■■■■ 4.17
TSEN54-201ENST00000333213 EIF4G1Q04637 1599 aaKnown RBP41.01■■■■■ 4.16
TSEN54-201ENST00000333213 PEG3Q9GZU2 1588 aa40.85■■■■■ 4.13
TSEN54-201ENST00000333213 ATAD2BQ9ULI0 1458 aa40.77■■■■■ 4.12
TSEN54-201ENST00000333213 SMARCA2P51531 1590 aa40.66■■■■■ 4.1
TSEN54-201ENST00000333213 TOP2AP11388 1531 aaKnown RBP40.63■■■■■ 4.09
TSEN54-201ENST00000333213 CC2D2AQ9P2K1 1620 aa40.5■■■■■ 4.07
TSEN54-201ENST00000333213 NCAPD3P42695 1498 aa40.47■■■■■ 4.07
TSEN54-201ENST00000333213 BAZ1BQ9UIG0 1483 aaKnown RBP40.47■■■■■ 4.07
TSEN54-201ENST00000333213 HMGXB3Q12766 1538 aa40.34■■■■■ 4.05
TSEN54-201ENST00000333213 CCDC88BA6NC98 1476 aa40.26■■■■■ 4.04
TSEN54-201ENST00000333213 DNAJC5BQ9UF47 199 aa39.94■■■■□ 3.98
TSEN54-201ENST00000333213 CHIC1Q5VXU3 224 aa39.73■■■■□ 3.95
TSEN54-201ENST00000333213 CFTRP13569 1480 aa39.47■■■■□ 3.91
TSEN54-201ENST00000333213 CADPSQ9ULU8 1353 aa39.4■■■■□ 3.9
TSEN54-201ENST00000333213 ABCC8Q09428 1581 aa39.31■■■■□ 3.88
TSEN54-201ENST00000333213 NESP48681 1621 aa39.23■■■■□ 3.87
TSEN54-201ENST00000333213 TRIM41Q8WV44 630 aa39.19■■■■□ 3.86
TSEN54-201ENST00000333213 PRDM2Q13029 1718 aa39.16■■■■□ 3.86
TSEN54-201ENST00000333213 LAMC3Q9Y6N6 1575 aa39.11■■■■□ 3.85
TSEN54-201ENST00000333213 WRNQ14191 1432 aaPredicted RBP eCLIP39.05■■■■□ 3.84
TSEN54-201ENST00000333213 FANCD2Q9BXW9 1451 aa38.95■■■■□ 3.83
TSEN54-201ENST00000333213 SYNJ1O43426 1573 aa38.94■■■■□ 3.82
TSEN54-201ENST00000333213 PDS5BQ9NTI5 1447 aa38.81■■■■□ 3.8
TSEN54-201ENST00000333213 CUX1P39880 1505 aa38.81■■■■□ 3.8
TSEN54-201ENST00000333213 TOP2BQ02880 1626 aa38.77■■■■□ 3.8
TSEN54-201ENST00000333213 BIVM-ERCC5R4GMW8 1640 aa38.73■■■■□ 3.79
TSEN54-201ENST00000333213 CEP164Q9UPV0 1460 aa38.72■■■■□ 3.79
TSEN54-201ENST00000333213 KIF21AQ7Z4S6 1674 aa38.7■■■■□ 3.79
TSEN54-201ENST00000333213 URB2Q14146 1524 aaKnown RBP38.53■■■■□ 3.76
TSEN54-201ENST00000333213 DNMBPQ6XZF7 1577 aa38.51■■■■□ 3.76
TSEN54-201ENST00000333213 TOPBP1Q92547 1522 aa38.5■■■■□ 3.75
TSEN54-201ENST00000333213 SOGA1O94964 1423 aa38.5■■■■□ 3.75
TSEN54-201ENST00000333213 FAM9AQ8IZU1 332 aaPredicted RBP38.5■■■■□ 3.75
TSEN54-201ENST00000333213 FGD5Q6ZNL6 1462 aa38.42■■■■□ 3.74
TSEN54-201ENST00000333213 RUSC2Q8N2Y8 1516 aa38.41■■■■□ 3.74
TSEN54-201ENST00000333213 ERCC6Q03468 1493 aa38.35■■■■□ 3.73
TSEN54-201ENST00000333213 MRC2Q9UBG0 1479 aa38.35■■■■□ 3.73
TSEN54-201ENST00000333213 POLA1P09884 1462 aaPredicted RBP38.3■■■■□ 3.72
TSEN54-201ENST00000333213 LOC105371045A0A1W2PR82 267 aa38.24■■■■□ 3.71
TSEN54-201ENST00000333213 EEA1Q15075 1411 aa38.22■■■■□ 3.71
TSEN54-201ENST00000333213 RAD54L2Q9Y4B4 1467 aa38.2■■■■□ 3.71
TSEN54-201ENST00000333213 WDR62O43379 1518 aa38.19■■■■□ 3.7
TSEN54-201ENST00000333213 THOC2Q8NI27 1593 aaKnown RBP38.18■■■■□ 3.7
TSEN54-201ENST00000333213 CSRNP3Q8WYN3 585 aa38.12■■■■□ 3.69
TSEN54-201ENST00000333213 CUX2O14529 1486 aa38.08■■■■□ 3.69
TSEN54-201ENST00000333213 KIF27Q86VH2 1401 aa38.06■■■■□ 3.68
TSEN54-201ENST00000333213 ABCA10Q8WWZ4 1543 aa38.06■■■■□ 3.68
TSEN54-201ENST00000333213 EHMT2Q96KQ7 1210 aa37.99■■■■□ 3.67
TSEN54-201ENST00000333213 WDR97A6NE52 1622 aa37.97■■■■□ 3.67
TSEN54-201ENST00000333213 TARBP1Q13395 1621 aaKnown RBP37.97■■■■□ 3.67
TSEN54-201ENST00000333213 TDRD9Q8NDG6 1382 aaKnown RBP37.85■■■■□ 3.65
TSEN54-201ENST00000333213 IGF1RP08069 1367 aa37.84■■■■□ 3.65
TSEN54-201ENST00000333213 IFT140Q96RY7 1462 aa37.81■■■■□ 3.64
TSEN54-201ENST00000333213 KIF21BO75037 1637 aa37.79■■■■□ 3.64
TSEN54-201ENST00000333213 ABCA5Q8WWZ7 1642 aa37.79■■■■□ 3.64
TSEN54-201ENST00000333213 PRXQ9BXM0 1461 aa37.78■■■■□ 3.64
TSEN54-201ENST00000333213 GAPVD1Q14C86 1478 aa37.72■■■■□ 3.63
TSEN54-201ENST00000333213 RAPGEF2Q9Y4G8 1499 aa37.72■■■■□ 3.63
TSEN54-201ENST00000333213 ZNF608Q9ULD9 1512 aaPredicted RBP37.71■■■■□ 3.63
TSEN54-201ENST00000333213 GOLGA3Q08378 1498 aa37.71■■■■□ 3.63
TSEN54-201ENST00000333213 AQRO60306 1485 aaKnown RBP eCLIP37.68■■■■□ 3.622e-6■■■■■ 30.4
TSEN54-201ENST00000333213 ERICH3Q5RHP9 1530 aa37.6■■■■□ 3.61
TSEN54-201ENST00000333213 CARMIL1Q5VZK9 1371 aa37.6■■■■□ 3.61
TSEN54-201ENST00000333213 UBTFP17480 764 aaKnown RBP37.57■■■■□ 3.6
TSEN54-201ENST00000333213 TNIKQ9UKE5 1360 aa37.54■■■■□ 3.6
TSEN54-201ENST00000333213 EIF4G3O43432 1585 aaKnown RBP37.52■■■■□ 3.6
TSEN54-201ENST00000333213 PBRM1Q86U86 1689 aa37.51■■■■□ 3.6
TSEN54-201ENST00000333213 CUL7Q14999 1698 aa37.49■■■■□ 3.59
TSEN54-201ENST00000333213 GRIN2BQ13224 1484 aa37.46■■■■□ 3.59
TSEN54-201ENST00000333213 CEP162Q5TB80 1403 aa37.33■■■■□ 3.57
TSEN54-201ENST00000333213 ADAMTS12P58397 1594 aa37.31■■■■□ 3.56
TSEN54-201ENST00000333213 SNAPC4Q5SXM2 1469 aa37.29■■■■□ 3.56
TSEN54-201ENST00000333213 FHAD1B1AJZ9 1412 aa37.29■■■■□ 3.56
TSEN54-201ENST00000333213 MAGI1Q96QZ7 1491 aaPredicted RBP37.18■■■■□ 3.54
TSEN54-201ENST00000333213 RANGAP1P46060 587 aaPredicted RBP37.12■■■■□ 3.53
TSEN54-201ENST00000333213 CLIP1P30622 1438 aa37.11■■■■□ 3.53
TSEN54-201ENST00000333213 SYNJ2O15056 1496 aa37.05■■■■□ 3.52
TSEN54-201ENST00000333213 GRIN2AQ12879 1464 aa37.03■■■■□ 3.52
TSEN54-201ENST00000333213 CTTNBP2Q8WZ74 1663 aa37.03■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms