RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 NISCHQ9Y2I1 1504 aa53.68■■■■■ 6.18
CPSF4-204ENST00000436336 CCDC180Q9P1Z9 1646 aa47.26■■■■■ 5.16
CPSF4-204ENST00000436336 ABCC9O60706 1549 aa45.03■■■■■ 4.8
CPSF4-204ENST00000436336 ZCCHC6Q5VYS8 1495 aaKnown RBP44.97■■■■■ 4.79
CPSF4-204ENST00000436336 DCAF1Q9Y4B6 1507 aa44.47■■■■■ 4.71
CPSF4-204ENST00000436336 DCAF8L2P0C7V8 631 aa44.33■■■■■ 4.69
CPSF4-204ENST00000436336 MYO15BQ96JP2 1530 aa44.21■■■■■ 4.67
CPSF4-204ENST00000436336 NACADO15069 1562 aa44.1■■■■■ 4.65
CPSF4-204ENST00000436336 RB1CC1Q8TDY2 1594 aa43.88■■■■■ 4.61
CPSF4-204ENST00000436336 SCRIBQ14160 1630 aa43.2■■■■■ 4.51
CPSF4-204ENST00000436336 SHROOM4Q9ULL8 1493 aa43.11■■■■■ 4.49
CPSF4-204ENST00000436336 UNC13AQ9UPW8 1703 aa43.02■■■■■ 4.48
CPSF4-204ENST00000436336 BICRAQ9NZM4 1560 aa42.51■■■■■ 4.4
CPSF4-204ENST00000436336 PABPN1Q86U42 306 aaKnown RBP eCLIP42.25■■■■■ 4.35
CPSF4-204ENST00000436336 CECR2Q9BXF3 1484 aa41.67■■■■■ 4.26
CPSF4-204ENST00000436336 BAZ1AQ9NRL2 1556 aaPredicted RBP41.54■■■■■ 4.24
CPSF4-204ENST00000436336 SMARCA4P51532 1647 aa41.44■■■■■ 4.22
CPSF4-204ENST00000436336 MROH2BQ7Z745 1585 aa41.39■■■■■ 4.22
CPSF4-204ENST00000436336 RSF1Q96T23 1441 aaPredicted RBP41.32■■■■■ 4.21
CPSF4-204ENST00000436336 EIF4G1Q04637 1599 aaKnown RBP41.29■■■■■ 4.2
CPSF4-204ENST00000436336 SUPT5HO00267 1087 aaKnown RBP41.16■■■■■ 4.18
CPSF4-204ENST00000436336 WIZO95785 1651 aa41.07■■■■■ 4.16
CPSF4-204ENST00000436336 PEG3Q9GZU2 1588 aa41■■■■■ 4.15
CPSF4-204ENST00000436336 SMARCA2P51531 1590 aa40.89■■■■■ 4.14
CPSF4-204ENST00000436336 ATAD2BQ9ULI0 1458 aa40.85■■■■■ 4.13
CPSF4-204ENST00000436336 CC2D2AQ9P2K1 1620 aa40.84■■■■■ 4.13
CPSF4-204ENST00000436336 TOP2AP11388 1531 aaKnown RBP40.66■■■■■ 4.1
CPSF4-204ENST00000436336 NCAPD3P42695 1498 aa40.64■■■■■ 4.1
CPSF4-204ENST00000436336 BAZ1BQ9UIG0 1483 aaKnown RBP40.6■■■■■ 4.09
CPSF4-204ENST00000436336 HMGXB3Q12766 1538 aa40.59■■■■■ 4.09
CPSF4-204ENST00000436336 DNAJC5BQ9UF47 199 aa40.21■■■■■ 4.03
CPSF4-204ENST00000436336 CCDC88BA6NC98 1476 aa40.15■■■■■ 4.02
CPSF4-204ENST00000436336 CFTRP13569 1480 aa39.55■■■■□ 3.92
CPSF4-204ENST00000436336 CADPSQ9ULU8 1353 aa39.51■■■■□ 3.92
CPSF4-204ENST00000436336 PRDM2Q13029 1718 aa39.51■■■■□ 3.92
CPSF4-204ENST00000436336 LAMC3Q9Y6N6 1575 aa39.44■■■■□ 3.9
CPSF4-204ENST00000436336 NESP48681 1621 aa39.33■■■■□ 3.89
CPSF4-204ENST00000436336 CHIC1Q5VXU3 224 aa39.11■■■■□ 3.85
CPSF4-204ENST00000436336 ABCC8Q09428 1581 aa39.08■■■■□ 3.85
CPSF4-204ENST00000436336 FANCD2Q9BXW9 1451 aa39.08■■■■□ 3.85
CPSF4-204ENST00000436336 PDS5BQ9NTI5 1447 aa39.08■■■■□ 3.85
CPSF4-204ENST00000436336 KIF21AQ7Z4S6 1674 aa39■■■■□ 3.83
CPSF4-204ENST00000436336 WRNQ14191 1432 aaPredicted RBP eCLIP38.94■■■■□ 3.825e-6■■■■■ 29.2
CPSF4-204ENST00000436336 CEP164Q9UPV0 1460 aa38.93■■■■□ 3.82
CPSF4-204ENST00000436336 SYNJ1O43426 1573 aa38.83■■■■□ 3.81
CPSF4-204ENST00000436336 TRIM41Q8WV44 630 aa38.83■■■■□ 3.81
CPSF4-204ENST00000436336 BIVM-ERCC5R4GMW8 1640 aa38.79■■■■□ 3.8
CPSF4-204ENST00000436336 TOP2BQ02880 1626 aa38.77■■■■□ 3.8
CPSF4-204ENST00000436336 CUX1P39880 1505 aa38.76■■■■□ 3.8
CPSF4-204ENST00000436336 ERCC6Q03468 1493 aa38.72■■■■□ 3.79
CPSF4-204ENST00000436336 DNMBPQ6XZF7 1577 aa38.68■■■■□ 3.78
CPSF4-204ENST00000436336 URB2Q14146 1524 aaKnown RBP38.63■■■■□ 3.77
CPSF4-204ENST00000436336 MRC2Q9UBG0 1479 aa38.62■■■■□ 3.77
CPSF4-204ENST00000436336 TOPBP1Q92547 1522 aa38.61■■■■□ 3.77
CPSF4-204ENST00000436336 THOC2Q8NI27 1593 aaKnown RBP38.52■■■■□ 3.76
CPSF4-204ENST00000436336 WDR62O43379 1518 aa38.47■■■■□ 3.75
CPSF4-204ENST00000436336 FGD5Q6ZNL6 1462 aa38.44■■■■□ 3.74
CPSF4-204ENST00000436336 POLA1P09884 1462 aaPredicted RBP38.35■■■■□ 3.73
CPSF4-204ENST00000436336 SOGA1O94964 1423 aa38.2■■■■□ 3.71
CPSF4-204ENST00000436336 RAD54L2Q9Y4B4 1467 aa38.17■■■■□ 3.7
CPSF4-204ENST00000436336 WDR97A6NE52 1622 aa38.15■■■■□ 3.7
CPSF4-204ENST00000436336 TARBP1Q13395 1621 aaKnown RBP38.13■■■■□ 3.69
CPSF4-204ENST00000436336 CUX2O14529 1486 aa38.13■■■■□ 3.69
CPSF4-204ENST00000436336 ABCA10Q8WWZ4 1543 aa38.12■■■■□ 3.69
CPSF4-204ENST00000436336 EEA1Q15075 1411 aa38.1■■■■□ 3.69
CPSF4-204ENST00000436336 RUSC2Q8N2Y8 1516 aa38.07■■■■□ 3.68
CPSF4-204ENST00000436336 IFT140Q96RY7 1462 aa38.05■■■■□ 3.68
CPSF4-204ENST00000436336 KIF27Q86VH2 1401 aa38.03■■■■□ 3.68
CPSF4-204ENST00000436336 FAM9AQ8IZU1 332 aaPredicted RBP38■■■■□ 3.67
CPSF4-204ENST00000436336 ABCA5Q8WWZ7 1642 aa37.91■■■■□ 3.66
CPSF4-204ENST00000436336 CSRNP3Q8WYN3 585 aa37.84■■■■□ 3.65
CPSF4-204ENST00000436336 TDRD9Q8NDG6 1382 aaKnown RBP37.83■■■■□ 3.65
CPSF4-204ENST00000436336 GAPVD1Q14C86 1478 aa37.8■■■■□ 3.64
CPSF4-204ENST00000436336 ZNF608Q9ULD9 1512 aaPredicted RBP37.78■■■■□ 3.64
CPSF4-204ENST00000436336 EIF4G3O43432 1585 aaKnown RBP37.75■■■■□ 3.63
CPSF4-204ENST00000436336 PBRM1Q86U86 1689 aa37.75■■■■□ 3.63
CPSF4-204ENST00000436336 AQRO60306 1485 aaKnown RBP eCLIP37.71■■■■□ 3.632e-7■■■■■ 78.1
CPSF4-204ENST00000436336 IGF1RP08069 1367 aa37.7■■■■□ 3.63
CPSF4-204ENST00000436336 ERICH3Q5RHP9 1530 aa37.7■■■■□ 3.63
CPSF4-204ENST00000436336 KIF21BO75037 1637 aa37.67■■■■□ 3.62
CPSF4-204ENST00000436336 CUL7Q14999 1698 aa37.63■■■■□ 3.62
CPSF4-204ENST00000436336 GRIN2BQ13224 1484 aa37.62■■■■□ 3.61
CPSF4-204ENST00000436336 PRXQ9BXM0 1461 aa37.6■■■■□ 3.61
CPSF4-204ENST00000436336 LOC105371045A0A1W2PR82 267 aa37.52■■■■□ 3.6
CPSF4-204ENST00000436336 CARMIL1Q5VZK9 1371 aa37.52■■■■□ 3.6
CPSF4-204ENST00000436336 GOLGA3Q08378 1498 aa37.5■■■■□ 3.59
CPSF4-204ENST00000436336 RAPGEF2Q9Y4G8 1499 aa37.46■■■■□ 3.59
CPSF4-204ENST00000436336 ADAMTS12P58397 1594 aa37.44■■■■□ 3.58
CPSF4-204ENST00000436336 SNAPC4Q5SXM2 1469 aa37.41■■■■□ 3.58
CPSF4-204ENST00000436336 EHMT2Q96KQ7 1210 aa37.41■■■■□ 3.58
CPSF4-204ENST00000436336 MAGI1Q96QZ7 1491 aaPredicted RBP37.4■■■■□ 3.58
CPSF4-204ENST00000436336 FHAD1B1AJZ9 1412 aa37.38■■■■□ 3.58
CPSF4-204ENST00000436336 UBTFP17480 764 aaKnown RBP37.27■■■■□ 3.56
CPSF4-204ENST00000436336 TNIKQ9UKE5 1360 aa37.24■■■■□ 3.55
CPSF4-204ENST00000436336 SYNJ2O15056 1496 aa37.24■■■■□ 3.55
CPSF4-204ENST00000436336 GRIN2AQ12879 1464 aa37.15■■■■□ 3.54
CPSF4-204ENST00000436336 CTTNBP2Q8WZ74 1663 aa37.15■■■■□ 3.54
CPSF4-204ENST00000436336 CHMP7Q8WUX9 453 aaPredicted RBP37.1■■■■□ 3.53
CPSF4-204ENST00000436336 CHD1O14646 1710 aa37.09■■■■□ 3.53
CPSF4-204ENST00000436336 FBLN2P98095 1184 aa37.02■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms