Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGCS2P54868 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGCS2P54868 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HMGCS2P54868 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HMGCS2P54868 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HMGCS2P54868 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HMGCS2P54868 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
HMGCS2P54868 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.84
HMGCS2P54868 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
HMGCS2P54868 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGCS2P54868 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
HMGCS2P54868 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
HMGCS2P54868 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HMGCS2P54868 IRS3P-201ENST00000223076 1006 ntBASIC26.57■■□□□ 1.84
HMGCS2P54868 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HMGCS2P54868 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.57■■□□□ 1.84
HMGCS2P54868 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGCS2P54868 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGCS2P54868 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.57■■□□□ 1.84
HMGCS2P54868 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGCS2P54868 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
HMGCS2P54868 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.57■■□□□ 1.84
HMGCS2P54868 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HMGCS2P54868 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC26.56■■□□□ 1.84
HMGCS2P54868 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HMGCS2P54868 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.56■■□□□ 1.84
HMGCS2P54868 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HMGCS2P54868 AC009086.3-201ENST00000623486 1008 ntBASIC26.56■■□□□ 1.84
HMGCS2P54868 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.56■■□□□ 1.84
HMGCS2P54868 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
HMGCS2P54868 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC26.56■■□□□ 1.84
HMGCS2P54868 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC26.56■■□□□ 1.84
HMGCS2P54868 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HMGCS2P54868 AC145676.1-201ENST00000514988 2004 ntBASIC26.55■■□□□ 1.84
HMGCS2P54868 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC26.55■■□□□ 1.84
HMGCS2P54868 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.55■■□□□ 1.84
HMGCS2P54868 MIR3181-201ENST00000578512 73 ntBASIC26.55■■□□□ 1.84
HMGCS2P54868 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
HMGCS2P54868 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.55■■□□□ 1.84
HMGCS2P54868 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HMGCS2P54868 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGCS2P54868 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.54■■□□□ 1.84
HMGCS2P54868 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.54■■□□□ 1.84
HMGCS2P54868 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGCS2P54868 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
HMGCS2P54868 AL162430.1-201ENST00000480705 870 ntBASIC26.54■■□□□ 1.84
HMGCS2P54868 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC26.54■■□□□ 1.84
HMGCS2P54868 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.54■■□□□ 1.84
HMGCS2P54868 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGCS2P54868 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGCS2P54868 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGCS2P54868 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGCS2P54868 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGCS2P54868 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
HMGCS2P54868 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGCS2P54868 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC26.53■■□□□ 1.84
HMGCS2P54868 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC26.53■■□□□ 1.84
HMGCS2P54868 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
HMGCS2P54868 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
HMGCS2P54868 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HMGCS2P54868 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
HMGCS2P54868 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HMGCS2P54868 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.52■■□□□ 1.84
HMGCS2P54868 AC233992.3-201ENST00000607491 485 ntBASIC26.52■■□□□ 1.84
HMGCS2P54868 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
HMGCS2P54868 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
HMGCS2P54868 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC26.51■■□□□ 1.83
HMGCS2P54868 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.51■■□□□ 1.83
HMGCS2P54868 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC26.51■■□□□ 1.83
HMGCS2P54868 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.51■■□□□ 1.83
HMGCS2P54868 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 HLA-L-211ENST00000482052 1765 ntBASIC26.51■■□□□ 1.83
HMGCS2P54868 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGCS2P54868 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGCS2P54868 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HMGCS2P54868 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
HMGCS2P54868 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
HMGCS2P54868 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
HMGCS2P54868 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HMGCS2P54868 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HMGCS2P54868 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
HMGCS2P54868 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGCS2P54868 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.5■■□□□ 1.83
HMGCS2P54868 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
HMGCS2P54868 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.49■■□□□ 1.83
HMGCS2P54868 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HMGCS2P54868 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HMGCS2P54868 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HMGCS2P54868 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms