Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MIR6821-201ENST00000617625 74 ntBASIC32.45■■■□□ 2.78
NPHP3Q7Z494 AL136967.2-201ENST00000623968 743 ntBASIC32.45■■■□□ 2.78
NPHP3Q7Z494 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC32.44■■■□□ 2.78
NPHP3Q7Z494 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
NPHP3Q7Z494 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
NPHP3Q7Z494 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC32.44■■■□□ 2.78
NPHP3Q7Z494 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
NPHP3Q7Z494 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC32.44■■■□□ 2.78
NPHP3Q7Z494 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC32.43■■■□□ 2.78
NPHP3Q7Z494 AF213884.3-201ENST00000563833 479 ntBASIC32.43■■■□□ 2.78
NPHP3Q7Z494 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC32.43■■■□□ 2.78
NPHP3Q7Z494 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.43■■■□□ 2.78
NPHP3Q7Z494 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC32.42■■■□□ 2.78
NPHP3Q7Z494 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
NPHP3Q7Z494 MIR939-201ENST00000401314 82 ntBASIC32.41■■■□□ 2.78
NPHP3Q7Z494 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
NPHP3Q7Z494 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC32.41■■■□□ 2.78
NPHP3Q7Z494 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC32.41■■■□□ 2.78
NPHP3Q7Z494 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
NPHP3Q7Z494 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC32.4■■■□□ 2.78
NPHP3Q7Z494 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC32.4■■■□□ 2.78
NPHP3Q7Z494 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
NPHP3Q7Z494 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
NPHP3Q7Z494 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC32.39■■■□□ 2.78
NPHP3Q7Z494 GRAMD4P4-201ENST00000613563 1115 ntBASIC32.39■■■□□ 2.78
NPHP3Q7Z494 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC32.38■■■□□ 2.77
NPHP3Q7Z494 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
NPHP3Q7Z494 AC097381.1-201ENST00000429019 1296 ntBASIC32.38■■■□□ 2.77
NPHP3Q7Z494 AP001330.3-201ENST00000520123 633 ntBASIC32.38■■■□□ 2.77
NPHP3Q7Z494 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC32.38■■■□□ 2.77
NPHP3Q7Z494 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
NPHP3Q7Z494 AP004609.3-201ENST00000610705 1884 ntBASIC32.37■■■□□ 2.77
NPHP3Q7Z494 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC32.36■■■□□ 2.77
NPHP3Q7Z494 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
NPHP3Q7Z494 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
NPHP3Q7Z494 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
NPHP3Q7Z494 GATM-206ENST00000558336 1522 ntTSL 2 BASIC32.36■■■□□ 2.77
NPHP3Q7Z494 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC32.35■■■□□ 2.77
NPHP3Q7Z494 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
NPHP3Q7Z494 RBM38-205ENST00000440234 686 ntTSL 2 BASIC32.35■■■□□ 2.77
NPHP3Q7Z494 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC32.35■■■□□ 2.77
NPHP3Q7Z494 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
NPHP3Q7Z494 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
NPHP3Q7Z494 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC32.34■■■□□ 2.77
NPHP3Q7Z494 FOXO3B-201ENST00000395675 1928 ntBASIC32.34■■■□□ 2.77
NPHP3Q7Z494 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC32.34■■■□□ 2.77
NPHP3Q7Z494 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
NPHP3Q7Z494 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
NPHP3Q7Z494 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
NPHP3Q7Z494 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
NPHP3Q7Z494 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC32.32■■■□□ 2.76
NPHP3Q7Z494 AC091305.1-201ENST00000479476 895 ntBASIC32.32■■■□□ 2.76
NPHP3Q7Z494 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
NPHP3Q7Z494 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC32.31■■■□□ 2.76
NPHP3Q7Z494 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC32.3■■■□□ 2.76
NPHP3Q7Z494 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC32.3■■■□□ 2.76
NPHP3Q7Z494 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC32.3■■■□□ 2.76
NPHP3Q7Z494 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
NPHP3Q7Z494 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC32.29■■■□□ 2.76
NPHP3Q7Z494 AL162430.1-201ENST00000480705 870 ntBASIC32.29■■■□□ 2.76
NPHP3Q7Z494 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
NPHP3Q7Z494 SF1-220ENST00000626028 704 ntTSL 2 BASIC32.29■■■□□ 2.76
NPHP3Q7Z494 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC32.29■■■□□ 2.76
NPHP3Q7Z494 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
NPHP3Q7Z494 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC32.28■■■□□ 2.76
NPHP3Q7Z494 DUX4L19-201ENST00000557448 1267 ntBASIC32.28■■■□□ 2.76
NPHP3Q7Z494 AC087623.3-201ENST00000607047 1098 ntBASIC32.28■■■□□ 2.76
NPHP3Q7Z494 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
NPHP3Q7Z494 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
NPHP3Q7Z494 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.28■■■□□ 2.76
NPHP3Q7Z494 GLI3-203ENST00000437480 451 ntTSL 2 BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 STOX2-205ENST00000513034 807 ntTSL 3 BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 PLD4-205ENST00000553861 667 ntTSL 2 BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
NPHP3Q7Z494 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
NPHP3Q7Z494 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC32.26■■■□□ 2.76
NPHP3Q7Z494 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC32.26■■■□□ 2.76
NPHP3Q7Z494 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC32.26■■■□□ 2.76
NPHP3Q7Z494 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC32.26■■■□□ 2.75
NPHP3Q7Z494 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC32.26■■■□□ 2.75
NPHP3Q7Z494 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
NPHP3Q7Z494 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
NPHP3Q7Z494 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
NPHP3Q7Z494 AC090877.2-201ENST00000558441 1738 ntBASIC32.25■■■□□ 2.75
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms