Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
PCDHGA1Q9Y5H4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC28.45■■■□□ 2.14
PCDHGA1Q9Y5H4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC28.44■■■□□ 2.14
PCDHGA1Q9Y5H4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.42■■■□□ 2.14
PCDHGA1Q9Y5H4 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC28.41■■■□□ 2.14
PCDHGA1Q9Y5H4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.41■■■□□ 2.14
PCDHGA1Q9Y5H4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
PCDHGA1Q9Y5H4 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
PCDHGA1Q9Y5H4 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC28.38■■■□□ 2.13
PCDHGA1Q9Y5H4 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.38■■■□□ 2.13
PCDHGA1Q9Y5H4 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
PCDHGA1Q9Y5H4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
PCDHGA1Q9Y5H4 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC28.34■■■□□ 2.13
PCDHGA1Q9Y5H4 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
PCDHGA1Q9Y5H4 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.32■■■□□ 2.12
PCDHGA1Q9Y5H4 RARRES2P7-201ENST00000567349 469 ntBASIC28.32■■■□□ 2.12
PCDHGA1Q9Y5H4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC28.31■■■□□ 2.12
PCDHGA1Q9Y5H4 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PCDHGA1Q9Y5H4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.27■■■□□ 2.12
PCDHGA1Q9Y5H4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC28.26■■■□□ 2.11
PCDHGA1Q9Y5H4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC28.21■■■□□ 2.11
PCDHGA1Q9Y5H4 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.19■■■□□ 2.1
PCDHGA1Q9Y5H4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.16■■■□□ 2.1
PCDHGA1Q9Y5H4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCDHGA1Q9Y5H4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.13■■■□□ 2.09
PCDHGA1Q9Y5H4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC28.12■■■□□ 2.09
PCDHGA1Q9Y5H4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCDHGA1Q9Y5H4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHGA1Q9Y5H4 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCDHGA1Q9Y5H4 AC097358.2-201ENST00000607541 1159 ntBASIC28.11■■■□□ 2.09
PCDHGA1Q9Y5H4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC28.08■■■□□ 2.09
PCDHGA1Q9Y5H4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.06■■■□□ 2.08
PCDHGA1Q9Y5H4 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC28.04■■■□□ 2.08
PCDHGA1Q9Y5H4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC28.03■■■□□ 2.08
PCDHGA1Q9Y5H4 SETD8P1-201ENST00000623146 1180 ntBASIC28.02■■■□□ 2.08
PCDHGA1Q9Y5H4 AC136428.2-201ENST00000563187 214 ntBASIC27.99■■■□□ 2.07
PCDHGA1Q9Y5H4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC27.99■■■□□ 2.07
PCDHGA1Q9Y5H4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.97■■■□□ 2.07
PCDHGA1Q9Y5H4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
PCDHGA1Q9Y5H4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
PCDHGA1Q9Y5H4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
PCDHGA1Q9Y5H4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC27.93■■■□□ 2.06
PCDHGA1Q9Y5H4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
PCDHGA1Q9Y5H4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
PCDHGA1Q9Y5H4 SUZ12P1-203ENST00000578195 985 ntBASIC27.9■■■□□ 2.06
PCDHGA1Q9Y5H4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.87■■■□□ 2.05
PCDHGA1Q9Y5H4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC27.83■■■□□ 2.05
PCDHGA1Q9Y5H4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
PCDHGA1Q9Y5H4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.82■■■□□ 2.04
PCDHGA1Q9Y5H4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
PCDHGA1Q9Y5H4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
PCDHGA1Q9Y5H4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC27.81■■■□□ 2.04
PCDHGA1Q9Y5H4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC27.79■■■□□ 2.04
PCDHGA1Q9Y5H4 RPS2P35-201ENST00000443417 897 ntBASIC27.79■■■□□ 2.04
PCDHGA1Q9Y5H4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC27.79■■■□□ 2.04
PCDHGA1Q9Y5H4 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
PCDHGA1Q9Y5H4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
PCDHGA1Q9Y5H4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
PCDHGA1Q9Y5H4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC27.76■■■□□ 2.03
PCDHGA1Q9Y5H4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC27.75■■■□□ 2.03
PCDHGA1Q9Y5H4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC27.74■■■□□ 2.03
PCDHGA1Q9Y5H4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC27.73■■■□□ 2.03
PCDHGA1Q9Y5H4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC27.73■■■□□ 2.03
PCDHGA1Q9Y5H4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC27.72■■■□□ 2.03
PCDHGA1Q9Y5H4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.02
PCDHGA1Q9Y5H4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC27.65■■■□□ 2.02
PCDHGA1Q9Y5H4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
PCDHGA1Q9Y5H4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC27.63■■■□□ 2.01
PCDHGA1Q9Y5H4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC27.63■■■□□ 2.01
PCDHGA1Q9Y5H4 MVK-208ENST00000539696 608 ntTSL 5 BASIC27.58■■■□□ 2.01
PCDHGA1Q9Y5H4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
PCDHGA1Q9Y5H4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
PCDHGA1Q9Y5H4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.57■■■□□ 2
PCDHGA1Q9Y5H4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
PCDHGA1Q9Y5H4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC27.55■■■□□ 2
PCDHGA1Q9Y5H4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC27.54■■■□□ 2
PCDHGA1Q9Y5H4 CAHM-201ENST00000604200 896 ntBASIC27.5■■□□□ 1.99
PCDHGA1Q9Y5H4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
PCDHGA1Q9Y5H4 AP006261.1-201ENST00000584783 668 ntBASIC27.49■■□□□ 1.99
PCDHGA1Q9Y5H4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC27.48■■□□□ 1.99
PCDHGA1Q9Y5H4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
PCDHGA1Q9Y5H4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC27.47■■□□□ 1.99
PCDHGA1Q9Y5H4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
PCDHGA1Q9Y5H4 AL162393.1-201ENST00000437852 946 ntBASIC27.43■■□□□ 1.98
PCDHGA1Q9Y5H4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
PCDHGA1Q9Y5H4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
PCDHGA1Q9Y5H4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC27.41■■□□□ 1.98
PCDHGA1Q9Y5H4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
PCDHGA1Q9Y5H4 AC145285.7-201ENST00000614819 1539 ntBASIC27.4■■□□□ 1.98
PCDHGA1Q9Y5H4 AL391121.1-201ENST00000607967 1349 ntBASIC27.39■■□□□ 1.97
PCDHGA1Q9Y5H4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PCDHGA1Q9Y5H4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
PCDHGA1Q9Y5H4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
PCDHGA1Q9Y5H4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
PCDHGA1Q9Y5H4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC27.36■■□□□ 1.97
PCDHGA1Q9Y5H4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.35■■□□□ 1.97
PCDHGA1Q9Y5H4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC27.34■■□□□ 1.97
PCDHGA1Q9Y5H4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
PCDHGA1Q9Y5H4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
PCDHGA1Q9Y5H4 AL133380.1-201ENST00000506013 324 ntBASIC27.3■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms