Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AL031258.1-201ENST00000623562 325 ntBASIC20.56■□□□□ 0.88
ALMS1Q8TCU4 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ALMS1Q8TCU4 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ALMS1Q8TCU4 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ALMS1Q8TCU4 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC20.53■□□□□ 0.88
ALMS1Q8TCU4 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ALMS1Q8TCU4 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ALMS1Q8TCU4 AC136428.2-201ENST00000563187 214 ntBASIC20.48■□□□□ 0.87
ALMS1Q8TCU4 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ALMS1Q8TCU4 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ALMS1Q8TCU4 RPS2P35-201ENST00000443417 897 ntBASIC20.42■□□□□ 0.86
ALMS1Q8TCU4 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ALMS1Q8TCU4 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ALMS1Q8TCU4 SUZ12P1-203ENST00000578195 985 ntBASIC20.36■□□□□ 0.85
ALMS1Q8TCU4 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC20.34■□□□□ 0.85
ALMS1Q8TCU4 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
ALMS1Q8TCU4 AC097358.2-201ENST00000607541 1159 ntBASIC20.29■□□□□ 0.84
ALMS1Q8TCU4 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.26■□□□□ 0.83
ALMS1Q8TCU4 SETD8P1-201ENST00000623146 1180 ntBASIC20.26■□□□□ 0.83
ALMS1Q8TCU4 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ALMS1Q8TCU4 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ALMS1Q8TCU4 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ALMS1Q8TCU4 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
ALMS1Q8TCU4 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC20.24■□□□□ 0.83
ALMS1Q8TCU4 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ALMS1Q8TCU4 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
ALMS1Q8TCU4 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
ALMS1Q8TCU4 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC20.19■□□□□ 0.82
ALMS1Q8TCU4 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
ALMS1Q8TCU4 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC20.16■□□□□ 0.82
ALMS1Q8TCU4 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
ALMS1Q8TCU4 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
ALMS1Q8TCU4 EBPL-203ENST00000378270 579 ntTSL 2 BASIC20.13■□□□□ 0.81
ALMS1Q8TCU4 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC20.12■□□□□ 0.81
ALMS1Q8TCU4 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.11■□□□□ 0.81
ALMS1Q8TCU4 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC20.1■□□□□ 0.81
ALMS1Q8TCU4 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC20.1■□□□□ 0.81
ALMS1Q8TCU4 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ALMS1Q8TCU4 AL162393.1-201ENST00000437852 946 ntBASIC20.07■□□□□ 0.8
ALMS1Q8TCU4 NRG1-221ENST00000614767 762 ntTSL 5 BASIC20.06■□□□□ 0.8
ALMS1Q8TCU4 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ALMS1Q8TCU4 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ALMS1Q8TCU4 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.05■□□□□ 0.8
ALMS1Q8TCU4 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ALMS1Q8TCU4 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC20.05■□□□□ 0.8
ALMS1Q8TCU4 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ALMS1Q8TCU4 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.04■□□□□ 0.8
ALMS1Q8TCU4 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.02■□□□□ 0.8
ALMS1Q8TCU4 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC20.01■□□□□ 0.79
ALMS1Q8TCU4 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ALMS1Q8TCU4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
ALMS1Q8TCU4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC19.97■□□□□ 0.79
ALMS1Q8TCU4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC19.97■□□□□ 0.79
ALMS1Q8TCU4 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ALMS1Q8TCU4 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
ALMS1Q8TCU4 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.94■□□□□ 0.78
ALMS1Q8TCU4 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ALMS1Q8TCU4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ALMS1Q8TCU4 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ALMS1Q8TCU4 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ALMS1Q8TCU4 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ALMS1Q8TCU4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ALMS1Q8TCU4 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.83■□□□□ 0.77
ALMS1Q8TCU4 CAHM-201ENST00000604200 896 ntBASIC19.83■□□□□ 0.77
ALMS1Q8TCU4 AL391121.1-201ENST00000607967 1349 ntBASIC19.83■□□□□ 0.77
ALMS1Q8TCU4 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.83■□□□□ 0.76
ALMS1Q8TCU4 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ALMS1Q8TCU4 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
ALMS1Q8TCU4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ALMS1Q8TCU4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC19.8■□□□□ 0.76
ALMS1Q8TCU4 AP006261.1-201ENST00000584783 668 ntBASIC19.8■□□□□ 0.76
ALMS1Q8TCU4 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ALMS1Q8TCU4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ALMS1Q8TCU4 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ALMS1Q8TCU4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ALMS1Q8TCU4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ALMS1Q8TCU4 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ALMS1Q8TCU4 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ALMS1Q8TCU4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC19.73■□□□□ 0.75
ALMS1Q8TCU4 HLA-V-202ENST00000446817 847 ntBASIC19.72■□□□□ 0.75
ALMS1Q8TCU4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ALMS1Q8TCU4 AC145285.7-201ENST00000614819 1539 ntBASIC19.7■□□□□ 0.74
ALMS1Q8TCU4 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
ALMS1Q8TCU4 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ALMS1Q8TCU4 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
ALMS1Q8TCU4 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
ALMS1Q8TCU4 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
ALMS1Q8TCU4 ABHD17AP4-201ENST00000411545 909 ntBASIC19.64■□□□□ 0.74
ALMS1Q8TCU4 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC19.64■□□□□ 0.73
ALMS1Q8TCU4 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
ALMS1Q8TCU4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
ALMS1Q8TCU4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
ALMS1Q8TCU4 MIR7108-201ENST00000614319 87 ntBASIC19.61■□□□□ 0.73
ALMS1Q8TCU4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.59■□□□□ 0.73
ALMS1Q8TCU4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
ALMS1Q8TCU4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
ALMS1Q8TCU4 DUX4L28-201ENST00000623687 678 ntBASIC19.58■□□□□ 0.72
ALMS1Q8TCU4 MIR3665-201ENST00000578708 105 ntBASIC19.57■□□□□ 0.72
ALMS1Q8TCU4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ALMS1Q8TCU4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms