Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC33.53■■■□□ 2.96
CCDC144BQ3MJ40 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
CCDC144BQ3MJ40 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
CCDC144BQ3MJ40 DYNLL1-208ENST00000550178 581 ntBASIC33.52■■■□□ 2.96
CCDC144BQ3MJ40 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC33.52■■■□□ 2.96
CCDC144BQ3MJ40 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC33.48■■■□□ 2.95
CCDC144BQ3MJ40 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
CCDC144BQ3MJ40 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC33.46■■■□□ 2.95
CCDC144BQ3MJ40 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
CCDC144BQ3MJ40 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
CCDC144BQ3MJ40 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
CCDC144BQ3MJ40 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
CCDC144BQ3MJ40 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC33.42■■■□□ 2.94
CCDC144BQ3MJ40 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC33.41■■■□□ 2.94
CCDC144BQ3MJ40 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC33.41■■■□□ 2.94
CCDC144BQ3MJ40 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
CCDC144BQ3MJ40 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC33.32■■■□□ 2.92
CCDC144BQ3MJ40 AL031258.1-201ENST00000623562 325 ntBASIC33.27■■■□□ 2.92
CCDC144BQ3MJ40 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
CCDC144BQ3MJ40 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
CCDC144BQ3MJ40 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
CCDC144BQ3MJ40 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
CCDC144BQ3MJ40 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC33.2■■■□□ 2.91
CCDC144BQ3MJ40 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC33.17■■■□□ 2.9
CCDC144BQ3MJ40 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC33.16■■■□□ 2.9
CCDC144BQ3MJ40 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC33.15■■■□□ 2.9
CCDC144BQ3MJ40 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC33.11■■■□□ 2.89
CCDC144BQ3MJ40 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC33.06■■■□□ 2.88
CCDC144BQ3MJ40 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC33.06■■■□□ 2.88
CCDC144BQ3MJ40 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC33.04■■■□□ 2.88
CCDC144BQ3MJ40 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CCDC144BQ3MJ40 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
CCDC144BQ3MJ40 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
CCDC144BQ3MJ40 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC144BQ3MJ40 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.95■■■□□ 2.87
CCDC144BQ3MJ40 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.93■■■□□ 2.86
CCDC144BQ3MJ40 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC32.91■■■□□ 2.86
CCDC144BQ3MJ40 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC144BQ3MJ40 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC32.87■■■□□ 2.85
CCDC144BQ3MJ40 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC144BQ3MJ40 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.85■■■□□ 2.85
CCDC144BQ3MJ40 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC32.84■■■□□ 2.85
CCDC144BQ3MJ40 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.84■■■□□ 2.85
CCDC144BQ3MJ40 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.83■■■□□ 2.85
CCDC144BQ3MJ40 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC32.8■■■□□ 2.84
CCDC144BQ3MJ40 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.79■■■□□ 2.84
CCDC144BQ3MJ40 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC32.77■■■□□ 2.84
CCDC144BQ3MJ40 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC144BQ3MJ40 RARRES2P7-201ENST00000567349 469 ntBASIC32.76■■■□□ 2.83
CCDC144BQ3MJ40 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.76■■■□□ 2.83
CCDC144BQ3MJ40 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.75■■■□□ 2.83
CCDC144BQ3MJ40 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC32.75■■■□□ 2.83
CCDC144BQ3MJ40 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC144BQ3MJ40 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC144BQ3MJ40 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC144BQ3MJ40 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.73■■■□□ 2.83
CCDC144BQ3MJ40 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.71■■■□□ 2.83
CCDC144BQ3MJ40 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
CCDC144BQ3MJ40 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC32.69■■■□□ 2.82
CCDC144BQ3MJ40 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC144BQ3MJ40 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC144BQ3MJ40 EBPL-203ENST00000378270 579 ntTSL 2 BASIC32.67■■■□□ 2.82
CCDC144BQ3MJ40 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC32.67■■■□□ 2.82
CCDC144BQ3MJ40 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC32.66■■■□□ 2.82
CCDC144BQ3MJ40 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC32.65■■■□□ 2.82
CCDC144BQ3MJ40 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.63■■■□□ 2.81
CCDC144BQ3MJ40 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC32.61■■■□□ 2.81
CCDC144BQ3MJ40 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CCDC144BQ3MJ40 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC32.59■■■□□ 2.81
CCDC144BQ3MJ40 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.81
CCDC144BQ3MJ40 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.56■■■□□ 2.8
CCDC144BQ3MJ40 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC32.56■■■□□ 2.8
CCDC144BQ3MJ40 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CCDC144BQ3MJ40 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC32.53■■■□□ 2.8
CCDC144BQ3MJ40 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
CCDC144BQ3MJ40 AC097358.2-201ENST00000607541 1159 ntBASIC32.51■■■□□ 2.79
CCDC144BQ3MJ40 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
CCDC144BQ3MJ40 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.5■■■□□ 2.79
CCDC144BQ3MJ40 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CCDC144BQ3MJ40 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.48■■■□□ 2.79
CCDC144BQ3MJ40 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
CCDC144BQ3MJ40 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC144BQ3MJ40 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
CCDC144BQ3MJ40 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC32.46■■■□□ 2.79
CCDC144BQ3MJ40 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC144BQ3MJ40 SETD8P1-201ENST00000623146 1180 ntBASIC32.45■■■□□ 2.79
CCDC144BQ3MJ40 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC144BQ3MJ40 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.44■■■□□ 2.78
CCDC144BQ3MJ40 KLF16-203ENST00000592313 508 ntTSL 3 BASIC32.44■■■□□ 2.78
CCDC144BQ3MJ40 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
CCDC144BQ3MJ40 AC136428.2-201ENST00000563187 214 ntBASIC32.43■■■□□ 2.78
CCDC144BQ3MJ40 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
CCDC144BQ3MJ40 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC144BQ3MJ40 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC32.37■■■□□ 2.77
CCDC144BQ3MJ40 ST7-205ENST00000393446 2114 ntTSL 5 BASIC32.35■■■□□ 2.77
CCDC144BQ3MJ40 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC32.35■■■□□ 2.77
CCDC144BQ3MJ40 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC32.35■■■□□ 2.77
CCDC144BQ3MJ40 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC144BQ3MJ40 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC144BQ3MJ40 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.32■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms