Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL9A1P20849 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL9A1P20849 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL9A1P20849 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.87■■■□□ 2.53
COL9A1P20849 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.86■■■□□ 2.53
COL9A1P20849 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL9A1P20849 SUZ12P1-203ENST00000578195 985 ntBASIC30.85■■■□□ 2.53
COL9A1P20849 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL9A1P20849 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL9A1P20849 AL031258.1-201ENST00000623562 325 ntBASIC30.76■■■□□ 2.51
COL9A1P20849 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.75■■■□□ 2.51
COL9A1P20849 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.75■■■□□ 2.51
COL9A1P20849 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
COL9A1P20849 MIR7108-201ENST00000614319 87 ntBASIC30.74■■■□□ 2.51
COL9A1P20849 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL9A1P20849 AC136428.2-201ENST00000563187 214 ntBASIC30.7■■■□□ 2.51
COL9A1P20849 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.61■■■□□ 2.49
COL9A1P20849 HLA-V-202ENST00000446817 847 ntBASIC30.59■■■□□ 2.49
COL9A1P20849 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.58■■■□□ 2.49
COL9A1P20849 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL9A1P20849 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.53■■■□□ 2.48
COL9A1P20849 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
COL9A1P20849 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.5■■■□□ 2.47
COL9A1P20849 SETD8P1-201ENST00000623146 1180 ntBASIC30.49■■■□□ 2.47
COL9A1P20849 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.47■■■□□ 2.47
COL9A1P20849 ABHD17AP4-201ENST00000411545 909 ntBASIC30.47■■■□□ 2.47
COL9A1P20849 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
COL9A1P20849 AL162393.1-201ENST00000437852 946 ntBASIC30.41■■■□□ 2.46
COL9A1P20849 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.4■■■□□ 2.46
COL9A1P20849 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
COL9A1P20849 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.4■■■□□ 2.46
COL9A1P20849 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
COL9A1P20849 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.37■■■□□ 2.45
COL9A1P20849 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL9A1P20849 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.36■■■□□ 2.45
COL9A1P20849 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.35■■■□□ 2.45
COL9A1P20849 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.31■■■□□ 2.44
COL9A1P20849 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC30.28■■■□□ 2.44
COL9A1P20849 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL9A1P20849 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
COL9A1P20849 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
COL9A1P20849 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.24■■■□□ 2.43
COL9A1P20849 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
COL9A1P20849 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.23■■■□□ 2.43
COL9A1P20849 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.23■■■□□ 2.43
COL9A1P20849 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL9A1P20849 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
COL9A1P20849 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
COL9A1P20849 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
COL9A1P20849 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
COL9A1P20849 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.2■■■□□ 2.43
COL9A1P20849 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
COL9A1P20849 AP006261.1-201ENST00000584783 668 ntBASIC30.17■■■□□ 2.42
COL9A1P20849 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
COL9A1P20849 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
COL9A1P20849 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.13■■■□□ 2.41
COL9A1P20849 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC30.13■■■□□ 2.41
COL9A1P20849 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.08■■■□□ 2.41
COL9A1P20849 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.08■■■□□ 2.41
COL9A1P20849 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.07■■■□□ 2.4
COL9A1P20849 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL9A1P20849 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.07■■■□□ 2.4
COL9A1P20849 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL9A1P20849 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.01■■■□□ 2.39
COL9A1P20849 KLF16-203ENST00000592313 508 ntTSL 3 BASIC30■■■□□ 2.39
COL9A1P20849 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL9A1P20849 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC29.98■■■□□ 2.39
COL9A1P20849 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC29.95■■■□□ 2.39
COL9A1P20849 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.95■■■□□ 2.39
COL9A1P20849 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
COL9A1P20849 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
COL9A1P20849 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC29.92■■■□□ 2.38
COL9A1P20849 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.92■■■□□ 2.38
COL9A1P20849 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC29.91■■■□□ 2.38
COL9A1P20849 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL9A1P20849 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.9■■■□□ 2.38
COL9A1P20849 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
COL9A1P20849 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.88■■■□□ 2.37
COL9A1P20849 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.85■■■□□ 2.37
COL9A1P20849 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.84■■■□□ 2.37
COL9A1P20849 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.81■■■□□ 2.36
COL9A1P20849 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.77■■■□□ 2.36
COL9A1P20849 CAHM-201ENST00000604200 896 ntBASIC29.75■■■□□ 2.35
COL9A1P20849 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL9A1P20849 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL9A1P20849 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC29.72■■■□□ 2.35
COL9A1P20849 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.7■■■□□ 2.35
COL9A1P20849 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.67■■■□□ 2.34
COL9A1P20849 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
COL9A1P20849 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC29.64■■■□□ 2.34
COL9A1P20849 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
COL9A1P20849 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.63■■■□□ 2.33
COL9A1P20849 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.63■■■□□ 2.33
COL9A1P20849 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.63■■■□□ 2.33
COL9A1P20849 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.62■■■□□ 2.33
COL9A1P20849 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.62■■■□□ 2.33
COL9A1P20849 MIR3665-201ENST00000578708 105 ntBASIC29.61■■■□□ 2.33
COL9A1P20849 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.6■■■□□ 2.33
COL9A1P20849 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
COL9A1P20849 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms