Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM3Q53GG5 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 AC009299.2-201ENST00000482477 511 ntBASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 AL139125.2-201ENST00000623134 1869 ntBASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM3Q53GG5 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM3Q53GG5 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 AC129492.7-201ENST00000622992 756 ntBASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM3Q53GG5 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
PDLIM3Q53GG5 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDLIM3Q53GG5 GUSBP5-201ENST00000418136 578 ntBASIC19.29■□□□□ 0.68
PDLIM3Q53GG5 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.29■□□□□ 0.68
PDLIM3Q53GG5 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.29■□□□□ 0.68
PDLIM3Q53GG5 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
PDLIM3Q53GG5 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 CHST11-203ENST00000547956 936 ntTSL 2 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 AL359504.2-201ENST00000605506 1601 ntBASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PDLIM3Q53GG5 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDLIM3Q53GG5 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.27■□□□□ 0.68
PDLIM3Q53GG5 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDLIM3Q53GG5 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PDLIM3Q53GG5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PDLIM3Q53GG5 AL359258.2-201ENST00000564063 1566 ntBASIC19.27■□□□□ 0.67
PDLIM3Q53GG5 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PDLIM3Q53GG5 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PDLIM3Q53GG5 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PDLIM3Q53GG5 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PDLIM3Q53GG5 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 AC092296.2-201ENST00000589470 999 ntBASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PDLIM3Q53GG5 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms