RNA–Protein interactions for RNA: ENST00000334527.11

NDEL1-201, Transcript of nudE neurodevelopment protein 1 like 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDEL1, Length 2,372 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDEL1-201ENST00000334527 NISCHQ9Y2I1 1504 aa48.94■■■■■ 5.43
NDEL1-201ENST00000334527 CCDC180Q9P1Z9 1646 aa41.75■■■■■ 4.27
NDEL1-201ENST00000334527 SHROOM4Q9ULL8 1493 aa41.51■■■■■ 4.24
NDEL1-201ENST00000334527 ZCCHC6Q5VYS8 1495 aaKnown RBP41.39■■■■■ 4.22
NDEL1-201ENST00000334527 SUPT5HO00267 1087 aaKnown RBP40.66■■■■■ 4.1
NDEL1-201ENST00000334527 DCAF8L2P0C7V8 631 aa40.45■■■■■ 4.07
NDEL1-201ENST00000334527 DCAF1Q9Y4B6 1507 aa40.22■■■■■ 4.03
NDEL1-201ENST00000334527 CHIC1Q5VXU3 224 aa39.53■■■■□ 3.92
NDEL1-201ENST00000334527 MYO15BQ96JP2 1530 aa39.35■■■■□ 3.89
NDEL1-201ENST00000334527 ABCC9O60706 1549 aa39.06■■■■□ 3.84
NDEL1-201ENST00000334527 SCRIBQ14160 1630 aa39.02■■■■□ 3.84
NDEL1-201ENST00000334527 RSF1Q96T23 1441 aaPredicted RBP38.65■■■■□ 3.78
NDEL1-201ENST00000334527 NACADO15069 1562 aa38.58■■■■□ 3.77
NDEL1-201ENST00000334527 LOC105371045A0A1W2PR82 267 aa38.29■■■■□ 3.72
NDEL1-201ENST00000334527 RB1CC1Q8TDY2 1594 aa38.27■■■■□ 3.72
NDEL1-201ENST00000334527 PCGF6Q9BYE7 350 aa38.16■■■■□ 3.7
NDEL1-201ENST00000334527 HRCP23327 699 aa38.14■■■■□ 3.7
NDEL1-201ENST00000334527 CECR2Q9BXF3 1484 aa38.12■■■■□ 3.69
NDEL1-201ENST00000334527 MROH2BQ7Z745 1585 aa38.01■■■■□ 3.68
NDEL1-201ENST00000334527 TRIM41Q8WV44 630 aa37.93■■■■□ 3.66
NDEL1-201ENST00000334527 WIZO95785 1651 aa37.82■■■■□ 3.65
NDEL1-201ENST00000334527 BAZ1AQ9NRL2 1556 aaPredicted RBP37.63■■■■□ 3.61
NDEL1-201ENST00000334527 FAM9AQ8IZU1 332 aaPredicted RBP37.55■■■■□ 3.6
NDEL1-201ENST00000334527 TRIM26Q12899 539 aaPredicted RBP37.53■■■■□ 3.6
NDEL1-201ENST00000334527 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
NDEL1-201ENST00000334527 SMARCA4P51532 1647 aa37.32■■■■□ 3.56
NDEL1-201ENST00000334527 EIF4G1Q04637 1599 aaKnown RBP37.31■■■■□ 3.56
NDEL1-201ENST00000334527 PPARGC1BQ86YN6 1023 aaKnown RBP37.28■■■■□ 3.56
NDEL1-201ENST00000334527 TOP2AP11388 1531 aaKnown RBP37.27■■■■□ 3.56
NDEL1-201ENST00000334527 EHMT2Q96KQ7 1210 aa37.19■■■■□ 3.54
NDEL1-201ENST00000334527 CCDC88BA6NC98 1476 aa37.06■■■■□ 3.52
NDEL1-201ENST00000334527 SMARCA2P51531 1590 aa37.04■■■■□ 3.52
NDEL1-201ENST00000334527 BICRAQ9NZM4 1560 aa36.91■■■■□ 3.5
NDEL1-201ENST00000334527 ABCC8Q09428 1581 aa36.91■■■■□ 3.5
NDEL1-201ENST00000334527 PABPN1Q86U42 306 aaKnown RBP eCLIP36.85■■■■□ 3.49
NDEL1-201ENST00000334527 ZEB1P37275 1124 aaPredicted RBP36.69■■■■□ 3.46
NDEL1-201ENST00000334527 PEG3Q9GZU2 1588 aa36.63■■■■□ 3.45
NDEL1-201ENST00000334527 SOGA1O94964 1423 aa36.52■■■■□ 3.44
NDEL1-201ENST00000334527 EEA1Q15075 1411 aa36.42■■■■□ 3.42
NDEL1-201ENST00000334527 ATAD2BQ9ULI0 1458 aa36.34■■■■□ 3.41
NDEL1-201ENST00000334527 CEP162Q5TB80 1403 aa36.34■■■■□ 3.41
NDEL1-201ENST00000334527 RUSC2Q8N2Y8 1516 aa36.34■■■■□ 3.41
NDEL1-201ENST00000334527 WRNQ14191 1432 aaPredicted RBP eCLIP36.32■■■■□ 3.41
NDEL1-201ENST00000334527 CSRNP3Q8WYN3 585 aa36.32■■■■□ 3.4
NDEL1-201ENST00000334527 TNIKQ9UKE5 1360 aa36.31■■■■□ 3.4
NDEL1-201ENST00000334527 BAZ1BQ9UIG0 1483 aaKnown RBP36.26■■■■□ 3.39
NDEL1-201ENST00000334527 SYNJ1O43426 1573 aa36.17■■■■□ 3.38
NDEL1-201ENST00000334527 UBTFP17480 764 aaKnown RBP36.14■■■■□ 3.38
NDEL1-201ENST00000334527 GOLGA3Q08378 1498 aa36.14■■■■□ 3.38
NDEL1-201ENST00000334527 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36■■■■□ 3.35
NDEL1-201ENST00000334527 TTBK1Q5TCY1 1321 aaPredicted RBP35.98■■■■□ 3.35
NDEL1-201ENST00000334527 CEP164Q9UPV0 1460 aa35.95■■■■□ 3.35
NDEL1-201ENST00000334527 KIF21BO75037 1637 aa35.93■■■■□ 3.34
NDEL1-201ENST00000334527 CCER1Q8TC90 406 aaPredicted RBP35.93■■■■□ 3.34
NDEL1-201ENST00000334527 TOP2BQ02880 1626 aa35.77■■■■□ 3.32
NDEL1-201ENST00000334527 HMGXB3Q12766 1538 aa35.7■■■■□ 3.3
NDEL1-201ENST00000334527 CLIP1P30622 1438 aa35.69■■■■□ 3.3
NDEL1-201ENST00000334527 NCAPD3P42695 1498 aa35.67■■■■□ 3.3
NDEL1-201ENST00000334527 BIVM-ERCC5R4GMW8 1640 aa35.66■■■■□ 3.3
NDEL1-201ENST00000334527 RAPGEF2Q9Y4G8 1499 aa35.66■■■■□ 3.3
NDEL1-201ENST00000334527 VPS8Q8N3P4 1428 aa35.54■■■■□ 3.28
NDEL1-201ENST00000334527 CUX1P39880 1505 aa35.41■■■■□ 3.26
NDEL1-201ENST00000334527 RANGAP1P46060 587 aaPredicted RBP35.38■■■■□ 3.25
NDEL1-201ENST00000334527 ERICH3Q5RHP9 1530 aa35.38■■■■□ 3.25
NDEL1-201ENST00000334527 CFTRP13569 1480 aa35.36■■■■□ 3.25
NDEL1-201ENST00000334527 PRXQ9BXM0 1461 aa35.36■■■■□ 3.25
NDEL1-201ENST00000334527 APLP2Q06481 763 aa35.35■■■■□ 3.25
NDEL1-201ENST00000334527 HNRNPUL2Q1KMD3 747 aaKnown RBP35.25■■■■□ 3.23
NDEL1-201ENST00000334527 KIF27Q86VH2 1401 aa35.23■■■■□ 3.23
NDEL1-201ENST00000334527 PRDM2Q13029 1718 aa35.16■■■■□ 3.22
NDEL1-201ENST00000334527 DIEXFQ68CQ4 756 aaKnown RBP35.15■■■■□ 3.22
NDEL1-201ENST00000334527 ARAP1Q96P48 1450 aa35.14■■■■□ 3.22
NDEL1-201ENST00000334527 SCAF1Q9H7N4 1312 aaKnown RBP35.02■■■■□ 3.2
NDEL1-201ENST00000334527 CADPSQ9ULU8 1353 aa34.96■■■■□ 3.19
NDEL1-201ENST00000334527 ZNF316A6NFI3 1004 aaPredicted RBP34.95■■■■□ 3.19
NDEL1-201ENST00000334527 CUX2O14529 1486 aa34.89■■■■□ 3.18
NDEL1-201ENST00000334527 KANK4Q5T7N3 995 aaPredicted RBP34.87■■■■□ 3.17
NDEL1-201ENST00000334527 ARHGAP35Q9NRY4 1499 aa34.85■■■■□ 3.17
NDEL1-201ENST00000334527 CC2D2AQ9P2K1 1620 aa34.82■■■■□ 3.16
NDEL1-201ENST00000334527 IGF1RP08069 1367 aa34.82■■■■□ 3.16
NDEL1-201ENST00000334527 FGD5Q6ZNL6 1462 aa34.79■■■■□ 3.16
NDEL1-201ENST00000334527 ACIN1Q9UKV3 1341 aaKnown RBP34.78■■■■□ 3.16
NDEL1-201ENST00000334527 NEUROD1Q13562 356 aa34.71■■■■□ 3.15
NDEL1-201ENST00000334527 RRBP1Q9P2E9 1410 aaKnown RBP34.7■■■■□ 3.15
NDEL1-201ENST00000334527 CARMIL1Q5VZK9 1371 aa34.68■■■■□ 3.14
NDEL1-201ENST00000334527 CENPBP07199 599 aaPredicted RBP34.64■■■■□ 3.14
NDEL1-201ENST00000334527 FANCD2Q9BXW9 1451 aa34.64■■■■□ 3.14
NDEL1-201ENST00000334527 DHX57Q6P158 1386 aaKnown RBP34.61■■■■□ 3.13
NDEL1-201ENST00000334527 CLSPNQ9HAW4 1339 aa34.6■■■■□ 3.13
NDEL1-201ENST00000334527 CCNB3Q8WWL7 1395 aa34.55■■■■□ 3.12
NDEL1-201ENST00000334527 DNMBPQ6XZF7 1577 aa34.5■■■■□ 3.11
NDEL1-201ENST00000334527 TIAM1Q13009 1591 aa34.49■■■■□ 3.11
NDEL1-201ENST00000334527 MAP3K1Q13233 1512 aa34.48■■■■□ 3.11
NDEL1-201ENST00000334527 RAD54L2Q9Y4B4 1467 aa34.42■■■■□ 3.1
NDEL1-201ENST00000334527 TOPBP1Q92547 1522 aa34.41■■■■□ 3.1
NDEL1-201ENST00000334527 ABCA10Q8WWZ4 1543 aa34.4■■■■□ 3.1
NDEL1-201ENST00000334527 MIER1Q8N108 512 aa34.4■■■■□ 3.1
NDEL1-201ENST00000334527 NESP48681 1621 aa34.39■■■■□ 3.1
NDEL1-201ENST00000334527 POLA1P09884 1462 aaPredicted RBP34.39■■■■□ 3.1
NDEL1-201ENST00000334527 ITGAEP38570 1179 aa34.35■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms