Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.733e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.07□□□□□ -1.763e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-205ENST00000519054 654 ntTSL 33.84□□□□□ -1.793e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-201ENST00000328392 572 ntTSL 53.79□□□□□ -1.83e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-212ENST00000523966 899 ntTSL 33.71□□□□□ -1.823e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.863e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.93□□□□□ -1.943e-9■■□□□ 12.3
LIN28BQ6ZN17 HDAC2-210ENST00000521163 557 ntTSL 510.94□□□□□ -0.668e-7■■□□□ 12.3
LIN28BQ6ZN17 HDAC2-213ENST00000522371 502 ntTSL 43.21□□□□□ -1.98e-7■■□□□ 12.3
LIN28BQ6ZN17 STAU1-209ENST00000456866 643 ntTSL 512.93□□□□□ -0.342e-9■■□□□ 12.3
LIN28BQ6ZN17 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC14.65□□□□□ -0.068e-7■■□□□ 12.3
LIN28BQ6ZN17 ARCN1-205ENST00000614498 2238 ntTSL 1 (best) BASIC9.88□□□□□ -0.838e-7■■□□□ 12.3
LIN28BQ6ZN17 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.218e-7■■□□□ 12.3
LIN28BQ6ZN17 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.7□□□□□ -1.348e-7■■□□□ 12.3
LIN28BQ6ZN17 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.37■■□□□ 1.172e-6■■□□□ 12.3
LIN28BQ6ZN17 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.492e-6■■□□□ 12.3
LIN28BQ6ZN17 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.23■□□□□ 0.352e-6■■□□□ 12.3
LIN28BQ6ZN17 ACTR3-206ENST00000484165 676 ntTSL 24.53□□□□□ -1.684e-8■■□□□ 12.3
LIN28BQ6ZN17 RPS16-203ENST00000595386 1035 ntTSL 217.52■□□□□ 0.41e-30■■□□□ 12.3
LIN28BQ6ZN17 RPS16-208ENST00000602153 444 ntTSL 211.54□□□□□ -0.561e-30■■□□□ 12.3
LIN28BQ6ZN17 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.043e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-202ENST00000435087 822 ntTSL 314.46□□□□□ -0.093e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-211ENST00000532105 771 ntTSL 3 BASIC14.46□□□□□ -0.093e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC14.15□□□□□ -0.143e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-206ENST00000471326 1170 ntTSL 211.31□□□□□ -0.63e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-203ENST00000447768 842 ntTSL 511.19□□□□□ -0.623e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-207ENST00000477780 1089 ntTSL 211.19□□□□□ -0.623e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-210ENST00000531435 1284 ntTSL 211.19□□□□□ -0.623e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-209ENST00000492550 733 ntTSL 510.4□□□□□ -0.743e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-205ENST00000459914 726 ntTSL 510.21□□□□□ -0.773e-8■■□□□ 12.3
LIN28BQ6ZN17 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.74□□□□□ -1.653e-8■■□□□ 12.3
LIN28BQ6ZN17 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.151e-10■■□□□ 12.3
LIN28BQ6ZN17 RPS21-202ENST00000370562 1002 ntTSL 2 BASIC13.85□□□□□ -0.197e-17■■□□□ 12.3
LIN28BQ6ZN17 RPS21-205ENST00000492356 429 ntTSL 1 (best)13.83□□□□□ -0.27e-17■■□□□ 12.3
LIN28BQ6ZN17 RPS21-204ENST00000450116 418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.377e-17■■□□□ 12.3
LIN28BQ6ZN17 RPS21-201ENST00000343986 344 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.677e-17■■□□□ 12.3
LIN28BQ6ZN17 HNRNPU-225ENST00000640119 461 ntTSL 513.22□□□□□ -0.291e-10■■□□□ 12.3
LIN28BQ6ZN17 HNRNPU-221ENST00000639824 1450 ntTSL 511.25□□□□□ -0.611e-10■■□□□ 12.3
LIN28BQ6ZN17 HNRNPU-218ENST00000639064 2625 ntTSL 59.75□□□□□ -0.851e-10■■□□□ 12.3
LIN28BQ6ZN17 LDLR-214ENST00000560628 535 ntTSL 311.72□□□□□ -0.536e-7■■□□□ 12.3
LIN28BQ6ZN17 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.344e-6■■□□□ 12.3
LIN28BQ6ZN17 ASNS-210ENST00000448127 579 ntTSL 29.3□□□□□ -0.925e-11■■□□□ 12.3
LIN28BQ6ZN17 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.738e-19■■□□□ 12.2
LIN28BQ6ZN17 HSPD1-201ENST00000345042 2299 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.38e-19■■□□□ 12.2
LIN28BQ6ZN17 EIF4G1-225ENST00000448284 677 ntTSL 515.2■□□□□ 0.025e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-211ENST00000560155 3485 ntTSL 1 (best)12.2□□□□□ -0.462e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-207ENST00000558780 3540 ntTSL 211.79□□□□□ -0.522e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-218ENST00000561199 3249 ntTSL 211.73□□□□□ -0.532e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-203ENST00000558046 3440 ntTSL 211.53□□□□□ -0.562e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-214ENST00000560798 3581 ntTSL 211.49□□□□□ -0.572e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-217ENST00000561090 3632 ntTSL 211.29□□□□□ -0.62e-8■■□□□ 12.2
LIN28BQ6ZN17 AL136295.4-201ENST00000561419 4351 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.642e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-201ENST00000354464 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.82e-8■■□□□ 12.2
LIN28BQ6ZN17 IPO4-209ENST00000559588 3537 ntTSL 1 (best)9.96□□□□□ -0.822e-8■■□□□ 12.2
LIN28BQ6ZN17 NDUFB3-203ENST00000450023 462 ntTSL 38.12□□□□□ -1.118e-8■■□□□ 12.2
LIN28BQ6ZN17 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.38■■□□□ 1.651e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-212ENST00000580322 1558 ntTSL 523.86■■□□□ 1.411e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.171e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-224ENST00000584557 2000 nt21.51■■□□□ 1.031e-6■■□□□ 12.2
LIN28BQ6ZN17 PAFAH1B2-201ENST00000304808 821 ntTSL 1 (best)21.34■■□□□ 1.011e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-217ENST00000593194 721 ntAPPRIS ALT2 TSL 220.62■□□□□ 0.891e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.871e-6■■□□□ 12.2
LIN28BQ6ZN17 RBBP7-209ENST00000468092 630 ntTSL 519.88■□□□□ 0.772e-8■■□□□ 12.2
LIN28BQ6ZN17 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.77■□□□□ 0.761e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-201ENST00000293208 1272 ntTSL 519.48■□□□□ 0.711e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.691e-6■■□□□ 12.2
LIN28BQ6ZN17 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.641e-6■■□□□ 12.2
LIN28BQ6ZN17 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.611e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-207ENST00000587089 880 ntTSL 518.23■□□□□ 0.511e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.23■□□□□ 0.511e-6■■□□□ 12.2
LIN28BQ6ZN17 CLUH-211ENST00000575014 4959 ntAPPRIS ALT2 TSL 517.45■□□□□ 0.387e-9■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.361e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.311e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-214ENST00000589745 529 ntTSL 217.01■□□□□ 0.311e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.261e-6■■□□□ 12.2
LIN28BQ6ZN17 SERF2-208ENST00000409617 700 ntTSL 216.36■□□□□ 0.211e-6■■□□□ 12.2
LIN28BQ6ZN17 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.171e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-216ENST00000593046 800 ntTSL 215.58■□□□□ 0.081e-6■■□□□ 12.2
LIN28BQ6ZN17 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.057e-9■■□□□ 12.2
LIN28BQ6ZN17 UBE3C-207ENST00000494532 543 ntTSL 215.18■□□□□ 0.021e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-207ENST00000578756 652 ntTSL 215.05■□□□□ -01e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-209ENST00000579005 462 ntTSL 315.05■□□□□ -01e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-220ENST00000583329 998 ntTSL 315.01□□□□□ -0.011e-6■■□□□ 12.2
LIN28BQ6ZN17 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.011e-6■■□□□ 12.2
LIN28BQ6ZN17 CLUH-210ENST00000574426 3844 ntAPPRIS ALT2 TSL 514.96□□□□□ -0.027e-9■■□□□ 12.2
LIN28BQ6ZN17 NAIF1-203ENST00000470245 963 ntTSL 1 (best)14.49□□□□□ -0.091e-6■■□□□ 12.2
LIN28BQ6ZN17 HYPK-204ENST00000497142 428 ntTSL 214.42□□□□□ -0.11e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-217ENST00000582022 2409 ntTSL 1 (best)14.35□□□□□ -0.111e-6■■□□□ 12.2
LIN28BQ6ZN17 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.127e-9■■□□□ 12.2
LIN28BQ6ZN17 AC125807.2-201ENST00000513358 3514 ntBASIC13.56□□□□□ -0.241e-6■■□□□ 12.2
LIN28BQ6ZN17 SMYD3-203ENST00000391836 732 ntTSL 513.53□□□□□ -0.241e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC13.46□□□□□ -0.251e-6■■□□□ 12.2
LIN28BQ6ZN17 HYPK-203ENST00000458412 1712 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.271e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-214ENST00000580601 2786 ntTSL 213.34□□□□□ -0.271e-6■■□□□ 12.2
LIN28BQ6ZN17 TGFB1-204ENST00000600196 399 ntTSL 513.33□□□□□ -0.281e-6■■□□□ 12.2
LIN28BQ6ZN17 SERF2-213ENST00000448830 2792 ntTSL 213.24□□□□□ -0.291e-6■■□□□ 12.2
LIN28BQ6ZN17 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.311e-6■■□□□ 12.2
LIN28BQ6ZN17 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.321e-6■■□□□ 12.2
LIN28BQ6ZN17 MCM3-202ENST00000419835 2523 ntTSL 2 BASIC12.77□□□□□ -0.371e-6■■□□□ 12.2
LIN28BQ6ZN17 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.391e-6■■□□□ 12.2
Retrieved 100 of 21,972 protein–RNA pairs in 488.2 ms