RNA–Protein interactions for RNA: ENST00000517625.5

SKP1-203, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 3 BASIC

Gene SKP1, Length 876 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-203ENST00000517625 AEBP2Q6ZN18 517 aaPredicted RBP14.65□□□□□ -0.06
SKP1-203ENST00000517625 CHIC1Q5VXU3 224 aa14.58□□□□□ -0.08
SKP1-203ENST00000517625 PHF23Q9BUL5 403 aaPredicted RBP12.75□□□□□ -0.37
SKP1-203ENST00000517625 SENP3Q9H4L4 574 aaPredicted RBP12.54□□□□□ -0.4
SKP1-203ENST00000517625 PLPPR3Q6T4P5 718 aa11.95□□□□□ -0.5
SKP1-203ENST00000517625 FOXD1Q16676 465 aa11.51□□□□□ -0.57
SKP1-203ENST00000517625 ADRA2BP18089 450 aa11.17□□□□□ -0.62
SKP1-203ENST00000517625 PPP6R1Q9UPN7 881 aa11.16□□□□□ -0.62
SKP1-203ENST00000517625 PIAS4Q8N2W9 510 aaPredicted RBP10.93□□□□□ -0.66
SKP1-203ENST00000517625 MSH5O43196 834 aa10.67□□□□□ -0.7
SKP1-203ENST00000517625 PPP4R3CPQ6ZMV5 832 aa10.5□□□□□ -0.73
SKP1-203ENST00000517625 KCNA4P22459 653 aa10.41□□□□□ -0.74
SKP1-203ENST00000517625 SCAF1Q9H7N4 1312 aaKnown RBP10.38□□□□□ -0.75
SKP1-203ENST00000517625 NCBP3Q53F19 620 aaKnown RBP10.36□□□□□ -0.75
SKP1-203ENST00000517625 POTEDQ86YR6 584 aa10.33□□□□□ -0.76
SKP1-203ENST00000517625 CNKSR2Q8WXI2 1034 aa10.22□□□□□ -0.77
SKP1-203ENST00000517625 NPM3O75607 178 aaKnown RBP10.12□□□□□ -0.79
SKP1-203ENST00000517625 MAPK8IP2Q13387 824 aaPredicted RBP10.05□□□□□ -0.8
SKP1-203ENST00000517625 DMRT2Q9Y5R5 561 aa10.02□□□□□ -0.81
SKP1-203ENST00000517625 SLC4A1APQ9BWU0 796 aaKnown RBP9.99□□□□□ -0.81
SKP1-203ENST00000517625 RNF216Q9NWF9 866 aaPredicted RBP9.99□□□□□ -0.81
SKP1-203ENST00000517625 DNAJC5BQ9UF47 199 aa9.96□□□□□ -0.82
SKP1-203ENST00000517625 HOXD11P31277 338 aaPredicted RBP9.89□□□□□ -0.83
SKP1-203ENST00000517625 EHMT2Q96KQ7 1210 aa9.83□□□□□ -0.84
SKP1-203ENST00000517625 CSRNP3Q8WYN3 585 aa9.67□□□□□ -0.86
SKP1-203ENST00000517625 FOXD4L1Q9NU39 408 aa9.61□□□□□ -0.87
SKP1-203ENST00000517625 ZBTB22O15209 634 aa9.56□□□□□ -0.88
SKP1-203ENST00000517625 SLC4A2P04920 1241 aa9.48□□□□□ -0.89
SKP1-203ENST00000517625 DCAF8L1A6NGE4 600 aa9.47□□□□□ -0.89
SKP1-203ENST00000517625 MYCNP04198 464 aaPredicted RBP9.42□□□□□ -0.9
SKP1-203ENST00000517625 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.38□□□□□ -0.919e-8■■■□□ 17.3
SKP1-203ENST00000517625 ATXN8OSP0DMR3 200 aa9.33□□□□□ -0.92
SKP1-203ENST00000517625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.31□□□□□ -0.92
SKP1-203ENST00000517625 HNRNPUL2Q1KMD3 747 aaKnown RBP9.31□□□□□ -0.92
SKP1-203ENST00000517625 SAMD1Q6SPF0 538 aaPredicted RBP9.25□□□□□ -0.93
SKP1-203ENST00000517625 U3KPZ7 1027 aaPredicted RBP9.23□□□□□ -0.93
SKP1-203ENST00000517625 APLP2Q06481 763 aa9.21□□□□□ -0.94
SKP1-203ENST00000517625 RNF39Q9H2S5 420 aa9.1□□□□□ -0.95
SKP1-203ENST00000517625 C1QBPQ07021 282 aaKnown RBP9.06□□□□□ -0.96
SKP1-203ENST00000517625 ATF5Q9Y2D1 282 aaPredicted RBP9□□□□□ -0.97
SKP1-203ENST00000517625 ZNF219Q9P2Y4 722 aaPredicted RBP8.97□□□□□ -0.97
SKP1-203ENST00000517625 CAPN15O75808 1086 aa8.87□□□□□ -0.99
SKP1-203ENST00000517625 SPINK5Q9NQ38 1064 aaPredicted RBP8.87□□□□□ -0.99
SKP1-203ENST00000517625 TRHP20396 242 aaPredicted RBP8.85□□□□□ -0.99
SKP1-203ENST00000517625 ZBTB12Q9Y330 459 aaPredicted RBP8.78□□□□□ -1
SKP1-203ENST00000517625 FBLN2P98095 1184 aa8.76□□□□□ -1.01
SKP1-203ENST00000517625 POLA2Q14181 598 aa8.76□□□□□ -1.01
SKP1-203ENST00000517625 FKBP8Q14318 412 aa8.74□□□□□ -1.01
SKP1-203ENST00000517625 DSG3P32926 999 aa8.7□□□□□ -1.02
SKP1-203ENST00000517625 CACNB1Q02641 598 aaPredicted RBP8.7□□□□□ -1.02
SKP1-203ENST00000517625 MKRN4PQ13434 485 aaPredicted RBP8.67□□□□□ -1.02
SKP1-203ENST00000517625 ABCB7O75027 752 aa8.66□□□□□ -1.02
SKP1-203ENST00000517625 SPDYE4A6NLX3 237 aa8.6□□□□□ -1.03
SKP1-203ENST00000517625 PROM2Q8N271 834 aa8.54□□□□□ -1.04
SKP1-203ENST00000517625 SPDYE2BA6NHP3 402 aa8.5□□□□□ -1.05
SKP1-203ENST00000517625 SPDYE6P0CI01 402 aa8.5□□□□□ -1.05
SKP1-203ENST00000517625 SPDYE2Q495Y8 402 aa8.5□□□□□ -1.05
SKP1-203ENST00000517625 FBXO3Q9UK99 471 aa8.5□□□□□ -1.05
SKP1-203ENST00000517625 OSCARQ8IYS5 282 aa8.46□□□□□ -1.06
SKP1-203ENST00000517625 SSUH2Q9Y2M2 353 aa8.44□□□□□ -1.06
SKP1-203ENST00000517625 ZNF692Q9BU19 519 aaPredicted RBP8.43□□□□□ -1.06
SKP1-203ENST00000517625 RBM42Q9BTD8 480 aaKnown RBP8.39□□□□□ -1.07
SKP1-203ENST00000517625 AMER1Q5JTC6 1135 aaPredicted RBP8.38□□□□□ -1.07
SKP1-203ENST00000517625 PABPN1Q86U42 306 aaKnown RBP eCLIP8.32□□□□□ -1.08
SKP1-203ENST00000517625 STAG3Q9UJ98 1225 aa8.32□□□□□ -1.08
SKP1-203ENST00000517625 VASPP50552 380 aaPredicted RBP8.31□□□□□ -1.08
SKP1-203ENST00000517625 AKT1S1Q96B36 256 aa8.28□□□□□ -1.08
SKP1-203ENST00000517625 RTN4Q9NQC3 1192 aaKnown RBP8.23□□□□□ -1.09
SKP1-203ENST00000517625 SPDYE1Q8NFV5 336 aaPredicted RBP8.2□□□□□ -1.1
SKP1-203ENST00000517625 PLEKHG5O94827 1062 aa8.16□□□□□ -1.1
SKP1-203ENST00000517625 IFNLR1Q8IU57 520 aaPredicted RBP8.16□□□□□ -1.1
SKP1-203ENST00000517625 ZBTB47Q9UFB7 747 aaPredicted RBP8.15□□□□□ -1.1
SKP1-203ENST00000517625 REM2Q8IYK8 340 aaPredicted RBP8.14□□□□□ -1.11
SKP1-203ENST00000517625 PLCD3Q8N3E9 789 aa8.14□□□□□ -1.11
SKP1-203ENST00000517625 MIER1Q8N108 512 aa8.11□□□□□ -1.11
SKP1-203ENST00000517625 SPOCK2Q92563 424 aa8.1□□□□□ -1.11
SKP1-203ENST00000517625 KLHL34Q8N239 644 aa8.09□□□□□ -1.11
SKP1-203ENST00000517625 PRR29P0C7W0 189 aa8.06□□□□□ -1.12
SKP1-203ENST00000517625 CLEC11AQ9Y240 323 aa8.06□□□□□ -1.12
SKP1-203ENST00000517625 PITPNM1O00562 1244 aa8.04□□□□□ -1.12
SKP1-203ENST00000517625 CREBZFQ9NS37 354 aa7.98□□□□□ -1.13
SKP1-203ENST00000517625 TRIM41Q8WV44 630 aa7.97□□□□□ -1.13
SKP1-203ENST00000517625 PKD2Q13563 968 aa7.96□□□□□ -1.14
SKP1-203ENST00000517625 NPM1P06748 294 aaKnown RBP eCLIP7.94□□□□□ -1.14
SKP1-203ENST00000517625 GSE1Q14687 1217 aa7.93□□□□□ -1.14
SKP1-203ENST00000517625 MNX1P50219 401 aaPredicted RBP7.92□□□□□ -1.14
SKP1-203ENST00000517625 POTEHQ6S545 545 aa7.92□□□□□ -1.14
SKP1-203ENST00000517625 NUBP1P53384 320 aa7.91□□□□□ -1.14
SKP1-203ENST00000517625 ECM2O94769 699 aaPredicted RBP7.9□□□□□ -1.14
SKP1-203ENST00000517625 FAM212AQ96EL1 285 aa7.89□□□□□ -1.15
SKP1-203ENST00000517625 FXR2P51116 673 aaKnown RBP eCLIP7.88□□□□□ -1.15
SKP1-203ENST00000517625 CHRDL2Q6WN34 429 aa7.88□□□□□ -1.15
SKP1-203ENST00000517625 CIZ1Q9ULV3 898 aaPredicted RBP7.88□□□□□ -1.15
SKP1-203ENST00000517625 PRKAR2AP13861 404 aaKnown RBP7.84□□□□□ -1.15
SKP1-203ENST00000517625 FARP1Q9Y4F1 1045 aaPredicted RBP7.84□□□□□ -1.15
SKP1-203ENST00000517625 DCAF8Q5TAQ9 597 aa7.82□□□□□ -1.16
SKP1-203ENST00000517625 TAOK2Q9UL54 1235 aa7.82□□□□□ -1.16
SKP1-203ENST00000517625 DCAF8L2P0C7V8 631 aa7.81□□□□□ -1.16
SKP1-203ENST00000517625 CHRM1P11229 460 aaPredicted RBP7.81□□□□□ -1.16
SKP1-203ENST00000517625 CHADLQ6NUI6 762 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms