RNA–Protein interactions for RNA: ENST00000353411.10

SKP1-202, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SKP1, Length 9,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-202ENST00000353411 MYT1Q01538 1121 aa8.7□□□□□ -1.02
SKP1-202ENST00000353411 PELP1Q8IZL8 1130 aaKnown RBP8.68□□□□□ -1.02
SKP1-202ENST00000353411 SLC24A1O60721 1099 aa8.25□□□□□ -1.09
SKP1-202ENST00000353411 TTBK1Q5TCY1 1321 aaPredicted RBP8.09□□□□□ -1.11
SKP1-202ENST00000353411 NISCHQ9Y2I1 1504 aa8.05□□□□□ -1.12
SKP1-202ENST00000353411 EHMT2Q96KQ7 1210 aa8.01□□□□□ -1.13
SKP1-202ENST00000353411 CENPBP07199 599 aaPredicted RBP7.99□□□□□ -1.13
SKP1-202ENST00000353411 ZEB1P37275 1124 aaPredicted RBP7.93□□□□□ -1.14
SKP1-202ENST00000353411 HRCP23327 699 aa7.85□□□□□ -1.15
SKP1-202ENST00000353411 PCGF6Q9BYE7 350 aa7.82□□□□□ -1.16
SKP1-202ENST00000353411 ERICH6Q7L0X2 663 aa7.8□□□□□ -1.16
SKP1-202ENST00000353411 CCER1Q8TC90 406 aaPredicted RBP7.8□□□□□ -1.16
SKP1-202ENST00000353411 SUPT5HO00267 1087 aaKnown RBP7.64□□□□□ -1.19
SKP1-202ENST00000353411 YTHDC1Q96MU7 727 aaKnown RBP7.59□□□□□ -1.19
SKP1-202ENST00000353411 RANGAP1P46060 587 aaPredicted RBP7.58□□□□□ -1.2
SKP1-202ENST00000353411 NEFLP07196 543 aa7.54□□□□□ -1.2
SKP1-202ENST00000353411 TRIM26Q12899 539 aaPredicted RBP7.53□□□□□ -1.2
SKP1-202ENST00000353411 GTF3C3Q9Y5Q9 886 aa7.48□□□□□ -1.21
SKP1-202ENST00000353411 PPARGC1BQ86YN6 1023 aaKnown RBP7.47□□□□□ -1.21
SKP1-202ENST00000353411 CHIC1Q5VXU3 224 aa7.47□□□□□ -1.21
SKP1-202ENST00000353411 ACIN1Q9UKV3 1341 aaKnown RBP7.45□□□□□ -1.22
SKP1-202ENST00000353411 DAXXQ9UER7 740 aaPredicted RBP7.44□□□□□ -1.22
SKP1-202ENST00000353411 MYT1LQ9UL68 1186 aa7.43□□□□□ -1.22
SKP1-202ENST00000353411 CLSPNQ9HAW4 1339 aa7.41□□□□□ -1.22
SKP1-202ENST00000353411 PLPPR3Q6T4P5 718 aa7.4□□□□□ -1.22
SKP1-202ENST00000353411 RTL5Q5HYW3 569 aaPredicted RBP7.39□□□□□ -1.23
SKP1-202ENST00000353411 DCAF8L2P0C7V8 631 aa7.38□□□□□ -1.23
SKP1-202ENST00000353411 DIEXFQ68CQ4 756 aaKnown RBP7.38□□□□□ -1.23
SKP1-202ENST00000353411 RTN4Q9NQC3 1192 aaKnown RBP7.37□□□□□ -1.23
SKP1-202ENST00000353411 SCAF1Q9H7N4 1312 aaKnown RBP7.37□□□□□ -1.23
SKP1-202ENST00000353411 GLIPR1L2Q4G1C9 344 aa7.36□□□□□ -1.23
SKP1-202ENST00000353411 SHROOM4Q9ULL8 1493 aa7.34□□□□□ -1.23
SKP1-202ENST00000353411 BCL11AQ9H165 835 aa7.33□□□□□ -1.24
SKP1-202ENST00000353411 APLP2Q06481 763 aa7.3□□□□□ -1.24
SKP1-202ENST00000353411 AMER1Q5JTC6 1135 aaPredicted RBP7.28□□□□□ -1.24
SKP1-202ENST00000353411 ANP32EQ9BTT0 268 aa7.28□□□□□ -1.24
SKP1-202ENST00000353411 CCDC180Q9P1Z9 1646 aa7.26□□□□□ -1.25
SKP1-202ENST00000353411 NCBP3Q53F19 620 aaKnown RBP7.23□□□□□ -1.25
SKP1-202ENST00000353411 PRKCSHP14314 528 aaPredicted RBP7.22□□□□□ -1.25
SKP1-202ENST00000353411 FAM9AQ8IZU1 332 aaPredicted RBP7.21□□□□□ -1.26
SKP1-202ENST00000353411 NEUROD1Q13562 356 aa7.2□□□□□ -1.26
SKP1-202ENST00000353411 CDK11AQ9UQ88 783 aaPredicted RBP7.2□□□□□ -1.26
SKP1-202ENST00000353411 EIF5BO60841 1220 aaKnown RBP7.2□□□□□ -1.26
SKP1-202ENST00000353411 DCAF1Q9Y4B6 1507 aa7.15□□□□□ -1.26
SKP1-202ENST00000353411 TRIM41Q8WV44 630 aa7.14□□□□□ -1.27
SKP1-202ENST00000353411 ZNF316A6NFI3 1004 aaPredicted RBP7.13□□□□□ -1.27
SKP1-202ENST00000353411 TULP1O00294 542 aaPredicted RBP7.12□□□□□ -1.27
SKP1-202ENST00000353411 ANP32AP39687 249 aaKnown RBP7.1□□□□□ -1.27
SKP1-202ENST00000353411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.08□□□□□ -1.28
SKP1-202ENST00000353411 BCANQ96GW7 911 aa7.07□□□□□ -1.28
SKP1-202ENST00000353411 LOC105371045A0A1W2PR82 267 aa7.04□□□□□ -1.28
SKP1-202ENST00000353411 ARXQ96QS3 562 aa7.04□□□□□ -1.28
SKP1-202ENST00000353411 ERICH6BQ5W0A0 696 aa7.03□□□□□ -1.28
SKP1-202ENST00000353411 PODXL2Q9NZ53 605 aa7.03□□□□□ -1.28
SKP1-202ENST00000353411 HOMEZQ8IX15 550 aa7.03□□□□□ -1.28
SKP1-202ENST00000353411 HAP1P54257 671 aaPredicted RBP7.03□□□□□ -1.28
SKP1-202ENST00000353411 RB1CC1Q8TDY2 1594 aa7.02□□□□□ -1.29
SKP1-202ENST00000353411 TPRNQ4KMQ1 711 aa7.01□□□□□ -1.29
SKP1-202ENST00000353411 ABCC9O60706 1549 aa6.98□□□□□ -1.29
SKP1-202ENST00000353411 FKBP8Q14318 412 aa6.98□□□□□ -1.29
SKP1-202ENST00000353411 KCNA4P22459 653 aa6.97□□□□□ -1.29
SKP1-202ENST00000353411 NBR1Q14596 966 aa6.97□□□□□ -1.29
SKP1-202ENST00000353411 CSRNP3Q8WYN3 585 aa6.96□□□□□ -1.29
SKP1-202ENST00000353411 ZBTB47Q9UFB7 747 aaPredicted RBP6.96□□□□□ -1.3
SKP1-202ENST00000353411 TIMELESSQ9UNS1 1208 aa6.95□□□□□ -1.3
SKP1-202ENST00000353411 NACADO15069 1562 aa6.94□□□□□ -1.3
SKP1-202ENST00000353411 ANP32CO43423 234 aa6.94□□□□□ -1.3
SKP1-202ENST00000353411 UBTFP17480 764 aaKnown RBP6.93□□□□□ -1.3
SKP1-202ENST00000353411 DEKP35659 375 aaKnown RBP6.93□□□□□ -1.3
SKP1-202ENST00000353411 TNNT2P45379 298 aaPredicted RBP6.92□□□□□ -1.3
SKP1-202ENST00000353411 NCLP19338 710 aaKnown RBP6.91□□□□□ -1.3
SKP1-202ENST00000353411 ANP32BQ92688 251 aaKnown RBP6.91□□□□□ -1.3
SKP1-202ENST00000353411 C14orf37Q86TY3 774 aa6.9□□□□□ -1.3
SKP1-202ENST00000353411 TAOK2Q9UL54 1235 aa6.9□□□□□ -1.31
SKP1-202ENST00000353411 SUPT16HQ9Y5B9 1047 aaKnown RBP6.9□□□□□ -1.31
SKP1-202ENST00000353411 NPM2Q86SE8 214 aaKnown RBP6.89□□□□□ -1.31
SKP1-202ENST00000353411 HNRNPUL2Q1KMD3 747 aaKnown RBP6.88□□□□□ -1.31
SKP1-202ENST00000353411 NEFMP07197 916 aa6.86□□□□□ -1.31
SKP1-202ENST00000353411 MIER1Q8N108 512 aa6.86□□□□□ -1.31
SKP1-202ENST00000353411 NOP58Q9Y2X3 529 aaKnown RBP6.86□□□□□ -1.31
SKP1-202ENST00000353411 PPM1GO15355 546 aaPredicted RBP6.86□□□□□ -1.31
SKP1-202ENST00000353411 POLR3GLQ9BT43 218 aa6.85□□□□□ -1.31
SKP1-202ENST00000353411 RBM19Q9Y4C8 960 aaKnown RBP6.84□□□□□ -1.31
SKP1-202ENST00000353411 SLC4A1APQ9BWU0 796 aaKnown RBP6.84□□□□□ -1.31
SKP1-202ENST00000353411 AEBP2Q6ZN18 517 aaPredicted RBP6.84□□□□□ -1.32
SKP1-202ENST00000353411 DDRGK1Q96HY6 314 aa6.83□□□□□ -1.32
SKP1-202ENST00000353411 RSPH6AQ9H0K4 717 aa6.83□□□□□ -1.32
SKP1-202ENST00000353411 TRIM44Q96DX7 344 aaPredicted RBP6.83□□□□□ -1.32
SKP1-202ENST00000353411 TSHZ2Q9NRE2 1034 aa6.83□□□□□ -1.32
SKP1-202ENST00000353411 PKNOX2Q96KN3 472 aa6.81□□□□□ -1.32
SKP1-202ENST00000353411 CDK11BP21127 795 aaKnown RBP6.8□□□□□ -1.32
SKP1-202ENST00000353411 NAP1L5Q96NT1 182 aaPredicted RBP6.8□□□□□ -1.32
SKP1-202ENST00000353411 MYO15BQ96JP2 1530 aa6.8□□□□□ -1.32
SKP1-202ENST00000353411 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.79□□□□□ -1.32
SKP1-202ENST00000353411 HSP90AA1P07900 732 aaKnown RBP6.79□□□□□ -1.32
SKP1-202ENST00000353411 ITGAEP38570 1179 aa6.78□□□□□ -1.32
SKP1-202ENST00000353411 CCDC136Q96JN2 1154 aa6.77□□□□□ -1.33
SKP1-202ENST00000353411 KLHL34Q8N239 644 aa6.75□□□□□ -1.33
SKP1-202ENST00000353411 UPF2Q9HAU5 1272 aaKnown RBP6.75□□□□□ -1.33
SKP1-202ENST00000353411 HNRNPUQ00839 825 aaKnown RBP eCLIP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms