RNA–Protein interactions for RNA: ENST00000522552.5

SKP1-209, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SKP1, Length 1,683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-209ENST00000522552 AEBP2Q6ZN18 517 aaPredicted RBP13.53□□□□□ -0.24
SKP1-209ENST00000522552 CHIC1Q5VXU3 224 aa13.1□□□□□ -0.31
SKP1-209ENST00000522552 POTEDQ86YR6 584 aa12.71□□□□□ -0.37
SKP1-209ENST00000522552 PHF23Q9BUL5 403 aaPredicted RBP11.55□□□□□ -0.56
SKP1-209ENST00000522552 SENP3Q9H4L4 574 aaPredicted RBP11.43□□□□□ -0.58
SKP1-209ENST00000522552 FOXD1Q16676 465 aa10.66□□□□□ -0.7
SKP1-209ENST00000522552 MSH5O43196 834 aa10.61□□□□□ -0.71
SKP1-209ENST00000522552 PLPPR3Q6T4P5 718 aa10.6□□□□□ -0.71
SKP1-209ENST00000522552 ADRA2BP18089 450 aa10.23□□□□□ -0.77
SKP1-209ENST00000522552 PPP6R1Q9UPN7 881 aa10.23□□□□□ -0.77
SKP1-209ENST00000522552 PIAS4Q8N2W9 510 aaPredicted RBP10.06□□□□□ -0.8
SKP1-209ENST00000522552 CACNB1Q02641 598 aaPredicted RBP9.96□□□□□ -0.82
SKP1-209ENST00000522552 POTEHQ6S545 545 aa9.71□□□□□ -0.85
SKP1-209ENST00000522552 EHMT2Q96KQ7 1210 aa9.51□□□□□ -0.89
SKP1-209ENST00000522552 PPP4R3CPQ6ZMV5 832 aa9.36□□□□□ -0.91
SKP1-209ENST00000522552 MAPK8IP2Q13387 824 aaPredicted RBP9.32□□□□□ -0.92
SKP1-209ENST00000522552 SLC24A1O60721 1099 aa9.3□□□□□ -0.92
SKP1-209ENST00000522552 SCAF1Q9H7N4 1312 aaKnown RBP9.28□□□□□ -0.92
SKP1-209ENST00000522552 KCNA4P22459 653 aa9.14□□□□□ -0.95
SKP1-209ENST00000522552 DMRT2Q9Y5R5 561 aa9.11□□□□□ -0.95
SKP1-209ENST00000522552 CNKSR2Q8WXI2 1034 aa9.08□□□□□ -0.96
SKP1-209ENST00000522552 NCBP3Q53F19 620 aaKnown RBP9.06□□□□□ -0.96
SKP1-209ENST00000522552 CSRNP3Q8WYN3 585 aa9.04□□□□□ -0.96
SKP1-209ENST00000522552 NPM3O75607 178 aaKnown RBP8.97□□□□□ -0.97
SKP1-209ENST00000522552 RNF216Q9NWF9 866 aaPredicted RBP8.91□□□□□ -0.98
SKP1-209ENST00000522552 HOXD11P31277 338 aaPredicted RBP8.88□□□□□ -0.99
SKP1-209ENST00000522552 DCAF8L1A6NGE4 600 aa8.83□□□□□ -1
SKP1-209ENST00000522552 RTN4Q9NQC3 1192 aaKnown RBP8.83□□□□□ -1
SKP1-209ENST00000522552 SLC4A1APQ9BWU0 796 aaKnown RBP8.81□□□□□ -1
SKP1-209ENST00000522552 RNF39Q9H2S5 420 aa8.81□□□□□ -1
SKP1-209ENST00000522552 AMER1Q5JTC6 1135 aaPredicted RBP8.75□□□□□ -1.01
SKP1-209ENST00000522552 C1QBPQ07021 282 aaKnown RBP8.69□□□□□ -1.02
SKP1-209ENST00000522552 PLSCR2Q9NRY7 297 aa8.65□□□□□ -1.03
SKP1-209ENST00000522552 DNAJC5BQ9UF47 199 aa8.58□□□□□ -1.04
SKP1-209ENST00000522552 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.53□□□□□ -1.049e-8■■■□□ 17.3
SKP1-209ENST00000522552 SLC4A2P04920 1241 aa8.48□□□□□ -1.05
SKP1-209ENST00000522552 ZBTB22O15209 634 aa8.46□□□□□ -1.06
SKP1-209ENST00000522552 SP7Q8TDD2 431 aaPredicted RBP8.43□□□□□ -1.06
SKP1-209ENST00000522552 U3KPZ7 1027 aaPredicted RBP8.37□□□□□ -1.07
SKP1-209ENST00000522552 FOXD4L1Q9NU39 408 aa8.36□□□□□ -1.07
SKP1-209ENST00000522552 MYCNP04198 464 aaPredicted RBP8.26□□□□□ -1.09
SKP1-209ENST00000522552 SPINK5Q9NQ38 1064 aaPredicted RBP8.2□□□□□ -1.1
SKP1-209ENST00000522552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.19□□□□□ -1.1
SKP1-209ENST00000522552 HNRNPUL2Q1KMD3 747 aaKnown RBP8.19□□□□□ -1.1
SKP1-209ENST00000522552 SAMD1Q6SPF0 538 aaPredicted RBP8.18□□□□□ -1.1
SKP1-209ENST00000522552 CAPN15O75808 1086 aa8.16□□□□□ -1.1
SKP1-209ENST00000522552 PRKCSHP14314 528 aaPredicted RBP8.14□□□□□ -1.11
SKP1-209ENST00000522552 TRHP20396 242 aaPredicted RBP8.12□□□□□ -1.11
SKP1-209ENST00000522552 ATF5Q9Y2D1 282 aaPredicted RBP8.11□□□□□ -1.11
SKP1-209ENST00000522552 APLP2Q06481 763 aa8.11□□□□□ -1.11
SKP1-209ENST00000522552 FKBP8Q14318 412 aa8.1□□□□□ -1.11
SKP1-209ENST00000522552 PLCB2Q00722 1185 aa8.05□□□□□ -1.12
SKP1-209ENST00000522552 ZNF219Q9P2Y4 722 aaPredicted RBP8.04□□□□□ -1.12
SKP1-209ENST00000522552 ABCB7O75027 752 aa8.03□□□□□ -1.12
SKP1-209ENST00000522552 BCANQ96GW7 911 aa8.03□□□□□ -1.12
SKP1-209ENST00000522552 TAOK2Q9UL54 1235 aa8.03□□□□□ -1.12
SKP1-209ENST00000522552 ATXN8OSP0DMR3 200 aa8.01□□□□□ -1.13
SKP1-209ENST00000522552 DSG3P32926 999 aa8□□□□□ -1.13
SKP1-209ENST00000522552 DAXXQ9UER7 740 aaPredicted RBP7.99□□□□□ -1.13
SKP1-209ENST00000522552 POLA2Q14181 598 aa7.95□□□□□ -1.14
SKP1-209ENST00000522552 HAP1P54257 671 aaPredicted RBP7.94□□□□□ -1.14
SKP1-209ENST00000522552 TPRNQ4KMQ1 711 aa7.89□□□□□ -1.15
SKP1-209ENST00000522552 LHX8Q68G74 356 aa7.89□□□□□ -1.15
SKP1-209ENST00000522552 CHRDL2Q6WN34 429 aa7.89□□□□□ -1.15
SKP1-209ENST00000522552 TIMELESSQ9UNS1 1208 aa7.83□□□□□ -1.16
SKP1-209ENST00000522552 ARXQ96QS3 562 aa7.82□□□□□ -1.16
SKP1-209ENST00000522552 VSIG10Q8N0Z9 540 aa7.81□□□□□ -1.16
SKP1-209ENST00000522552 TULP1O00294 542 aaPredicted RBP7.76□□□□□ -1.17
SKP1-209ENST00000522552 ZBTB12Q9Y330 459 aaPredicted RBP7.74□□□□□ -1.17
SKP1-209ENST00000522552 FBLN2P98095 1184 aa7.73□□□□□ -1.17
SKP1-209ENST00000522552 MKRN4PQ13434 485 aaPredicted RBP7.73□□□□□ -1.17
SKP1-209ENST00000522552 OSCARQ8IYS5 282 aa7.7□□□□□ -1.18
SKP1-209ENST00000522552 KDM2AQ9Y2K7 1162 aa7.68□□□□□ -1.18
SKP1-209ENST00000522552 DCAF8L2P0C7V8 631 aa7.67□□□□□ -1.18
SKP1-209ENST00000522552 HAX1O00165 279 aa7.67□□□□□ -1.18
SKP1-209ENST00000522552 GTF3C3Q9Y5Q9 886 aa7.63□□□□□ -1.19
SKP1-209ENST00000522552 PCDH10Q9P2E7 1040 aa7.61□□□□□ -1.19
SKP1-209ENST00000522552 HOMEZQ8IX15 550 aa7.6□□□□□ -1.19
SKP1-209ENST00000522552 RBM42Q9BTD8 480 aaKnown RBP7.59□□□□□ -1.19
SKP1-209ENST00000522552 ERICH6Q7L0X2 663 aa7.57□□□□□ -1.2
SKP1-209ENST00000522552 ZNF692Q9BU19 519 aaPredicted RBP7.55□□□□□ -1.2
SKP1-209ENST00000522552 SPDYE2BA6NHP3 402 aa7.54□□□□□ -1.2
SKP1-209ENST00000522552 SPDYE6P0CI01 402 aa7.54□□□□□ -1.2
SKP1-209ENST00000522552 SPDYE2Q495Y8 402 aa7.54□□□□□ -1.2
SKP1-209ENST00000522552 FBXO3Q9UK99 471 aa7.54□□□□□ -1.2
SKP1-209ENST00000522552 SPDYE4A6NLX3 237 aa7.53□□□□□ -1.2
SKP1-209ENST00000522552 PKD2Q13563 968 aa7.51□□□□□ -1.21
SKP1-209ENST00000522552 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.51□□□□□ -1.21
SKP1-209ENST00000522552 POTEMA6NI47 508 aa7.5□□□□□ -1.21
SKP1-209ENST00000522552 PAXIP1Q6ZW49 1069 aaPredicted RBP7.49□□□□□ -1.21
SKP1-209ENST00000522552 TMEM132AQ24JP5 1023 aa7.48□□□□□ -1.21
SKP1-209ENST00000522552 BBXQ8WY36 941 aaPredicted RBP7.48□□□□□ -1.21
SKP1-209ENST00000522552 AKT1S1Q96B36 256 aa7.48□□□□□ -1.21
SKP1-209ENST00000522552 SSUH2Q9Y2M2 353 aa7.48□□□□□ -1.21
SKP1-209ENST00000522552 VASPP50552 380 aaPredicted RBP7.46□□□□□ -1.22
SKP1-209ENST00000522552 PABPN1Q86U42 306 aaKnown RBP eCLIP7.46□□□□□ -1.22
SKP1-209ENST00000522552 CFAP44Q96MT7 982 aa7.46□□□□□ -1.22
SKP1-209ENST00000522552 REM2Q8IYK8 340 aaPredicted RBP7.45□□□□□ -1.22
SKP1-209ENST00000522552 IFNLR1Q8IU57 520 aaPredicted RBP7.44□□□□□ -1.22
SKP1-209ENST00000522552 NPM1P06748 294 aaKnown RBP eCLIP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms