RNA–Protein interactions for RNA: ENST00000328392.10

SKP1-201, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 5

Gene SKP1, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-201ENST00000328392 AEBP2Q6ZN18 517 aaPredicted RBP21.98■■□□□ 1.11
SKP1-201ENST00000328392 CHIC1Q5VXU3 224 aa21.2■□□□□ 0.98
SKP1-201ENST00000328392 PHF23Q9BUL5 403 aaPredicted RBP18.69■□□□□ 0.58
SKP1-201ENST00000328392 SENP3Q9H4L4 574 aaPredicted RBP18.57■□□□□ 0.56
SKP1-201ENST00000328392 FOXD1Q16676 465 aa17.34■□□□□ 0.37
SKP1-201ENST00000328392 PLPPR3Q6T4P5 718 aa17.09■□□□□ 0.33
SKP1-201ENST00000328392 PPP6R1Q9UPN7 881 aa16.58■□□□□ 0.24
SKP1-201ENST00000328392 ADRA2BP18089 450 aa16.54■□□□□ 0.24
SKP1-201ENST00000328392 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.2
SKP1-201ENST00000328392 MSH5O43196 834 aa15.97■□□□□ 0.15
SKP1-201ENST00000328392 MAPK8IP2Q13387 824 aaPredicted RBP15.09■□□□□ 0.01
SKP1-201ENST00000328392 PPP4R3CPQ6ZMV5 832 aa15.08■□□□□ 0
SKP1-201ENST00000328392 SCAF1Q9H7N4 1312 aaKnown RBP15□□□□□ -0.01
SKP1-201ENST00000328392 POTEDQ86YR6 584 aa14.97□□□□□ -0.01
SKP1-201ENST00000328392 DMRT2Q9Y5R5 561 aa14.82□□□□□ -0.04
SKP1-201ENST00000328392 CNKSR2Q8WXI2 1034 aa14.66□□□□□ -0.06
SKP1-201ENST00000328392 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
SKP1-201ENST00000328392 KCNA4P22459 653 aa14.55□□□□□ -0.08
SKP1-201ENST00000328392 NPM3O75607 178 aaKnown RBP14.43□□□□□ -0.1
SKP1-201ENST00000328392 HOXD11P31277 338 aaPredicted RBP14.43□□□□□ -0.1
SKP1-201ENST00000328392 RNF216Q9NWF9 866 aaPredicted RBP14.42□□□□□ -0.1
SKP1-201ENST00000328392 DCAF8L1A6NGE4 600 aa14.22□□□□□ -0.13
SKP1-201ENST00000328392 DNAJC5BQ9UF47 199 aa13.95□□□□□ -0.18
SKP1-201ENST00000328392 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
SKP1-201ENST00000328392 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.76□□□□□ -0.211e-7■■■□□ 17.9
SKP1-201ENST00000328392 RNF39Q9H2S5 420 aa13.72□□□□□ -0.21
SKP1-201ENST00000328392 SLC4A2P04920 1241 aa13.7□□□□□ -0.22
SKP1-201ENST00000328392 U3KPZ7 1027 aaPredicted RBP13.55□□□□□ -0.24
SKP1-201ENST00000328392 CACNB1Q02641 598 aaPredicted RBP13.5□□□□□ -0.25
SKP1-201ENST00000328392 C1QBPQ07021 282 aaKnown RBP13.5□□□□□ -0.25
SKP1-201ENST00000328392 ZBTB22O15209 634 aa13.42□□□□□ -0.26
SKP1-201ENST00000328392 FOXD4L1Q9NU39 408 aa13.38□□□□□ -0.27
SKP1-201ENST00000328392 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
SKP1-201ENST00000328392 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
SKP1-201ENST00000328392 EHMT2Q96KQ7 1210 aa13.21□□□□□ -0.29
SKP1-201ENST00000328392 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.19□□□□□ -0.3
SKP1-201ENST00000328392 HNRNPUL2Q1KMD3 747 aaKnown RBP13.19□□□□□ -0.3
SKP1-201ENST00000328392 CAPN15O75808 1086 aa13.17□□□□□ -0.3
SKP1-201ENST00000328392 SAMD1Q6SPF0 538 aaPredicted RBP13.17□□□□□ -0.3
SKP1-201ENST00000328392 CSRNP3Q8WYN3 585 aa13.15□□□□□ -0.3
SKP1-201ENST00000328392 APLP2Q06481 763 aa13.08□□□□□ -0.32
SKP1-201ENST00000328392 TRHP20396 242 aaPredicted RBP13.07□□□□□ -0.32
SKP1-201ENST00000328392 ATF5Q9Y2D1 282 aaPredicted RBP13.05□□□□□ -0.32
SKP1-201ENST00000328392 DSG3P32926 999 aa13□□□□□ -0.33
SKP1-201ENST00000328392 ZNF219Q9P2Y4 722 aaPredicted RBP12.99□□□□□ -0.33
SKP1-201ENST00000328392 ABCB7O75027 752 aa12.94□□□□□ -0.34
SKP1-201ENST00000328392 ATXN8OSP0DMR3 200 aa12.89□□□□□ -0.35
SKP1-201ENST00000328392 POLA2Q14181 598 aa12.82□□□□□ -0.36
SKP1-201ENST00000328392 ZBTB12Q9Y330 459 aaPredicted RBP12.48□□□□□ -0.41
SKP1-201ENST00000328392 MKRN4PQ13434 485 aaPredicted RBP12.46□□□□□ -0.41
SKP1-201ENST00000328392 OSCARQ8IYS5 282 aa12.4□□□□□ -0.42
SKP1-201ENST00000328392 FBLN2P98095 1184 aa12.39□□□□□ -0.43
SKP1-201ENST00000328392 RBM42Q9BTD8 480 aaKnown RBP12.31□□□□□ -0.44
SKP1-201ENST00000328392 SPDYE2BA6NHP3 402 aa12.17□□□□□ -0.46
SKP1-201ENST00000328392 SPDYE6P0CI01 402 aa12.17□□□□□ -0.46
SKP1-201ENST00000328392 SPDYE2Q495Y8 402 aa12.17□□□□□ -0.46
SKP1-201ENST00000328392 AKT1S1Q96B36 256 aa12.15□□□□□ -0.46
SKP1-201ENST00000328392 ZNF692Q9BU19 519 aaPredicted RBP12.13□□□□□ -0.47
SKP1-201ENST00000328392 SSUH2Q9Y2M2 353 aa12.09□□□□□ -0.47
SKP1-201ENST00000328392 REM2Q8IYK8 340 aaPredicted RBP12.08□□□□□ -0.48
SKP1-201ENST00000328392 SPDYE4A6NLX3 237 aa12.03□□□□□ -0.48
SKP1-201ENST00000328392 PABPN1Q86U42 306 aaKnown RBP eCLIP11.98□□□□□ -0.49
SKP1-201ENST00000328392 PITPNM1O00562 1244 aa11.95□□□□□ -0.5
SKP1-201ENST00000328392 CHRDL2Q6WN34 429 aa11.94□□□□□ -0.5
SKP1-201ENST00000328392 FKBP8Q14318 412 aa11.88□□□□□ -0.51
SKP1-201ENST00000328392 CLEC11AQ9Y240 323 aa11.87□□□□□ -0.51
SKP1-201ENST00000328392 SPDYE1Q8NFV5 336 aaPredicted RBP11.86□□□□□ -0.51
SKP1-201ENST00000328392 POTEHQ6S545 545 aa11.79□□□□□ -0.52
SKP1-201ENST00000328392 PROM2Q8N271 834 aa11.79□□□□□ -0.52
SKP1-201ENST00000328392 PIP4P2Q8N4L2 257 aa11.77□□□□□ -0.53
SKP1-201ENST00000328392 FXR2P51116 673 aaKnown RBP eCLIP11.74□□□□□ -0.53
SKP1-201ENST00000328392 PRR29P0C7W0 189 aa11.71□□□□□ -0.53
SKP1-201ENST00000328392 STAG3Q9UJ98 1225 aa11.67□□□□□ -0.54
SKP1-201ENST00000328392 CHADLQ6NUI6 762 aa11.65□□□□□ -0.54
SKP1-201ENST00000328392 PRKAR2AP13861 404 aaKnown RBP11.64□□□□□ -0.55
SKP1-201ENST00000328392 CREBZFQ9NS37 354 aa11.56□□□□□ -0.56
SKP1-201ENST00000328392 FARP1Q9Y4F1 1045 aaPredicted RBP11.47□□□□□ -0.57
SKP1-201ENST00000328392 HAX1O00165 279 aa11.43□□□□□ -0.58
SKP1-201ENST00000328392 MIER1Q8N108 512 aa11.43□□□□□ -0.58
SKP1-201ENST00000328392 MNX1P50219 401 aaPredicted RBP11.42□□□□□ -0.58
SKP1-201ENST00000328392 FBXO3Q9UK99 471 aa11.42□□□□□ -0.58
SKP1-201ENST00000328392 EVX2Q03828 476 aa11.4□□□□□ -0.58
SKP1-201ENST00000328392 PLCD3Q8N3E9 789 aa11.37□□□□□ -0.59
SKP1-201ENST00000328392 C19orf67A6NJJ6 358 aa11.36□□□□□ -0.59
SKP1-201ENST00000328392 VASPP50552 380 aaPredicted RBP11.33□□□□□ -0.6
SKP1-201ENST00000328392 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
SKP1-201ENST00000328392 CD44P16070 742 aaKnown RBP11.29□□□□□ -0.6
SKP1-201ENST00000328392 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
SKP1-201ENST00000328392 SP7Q8TDD2 431 aaPredicted RBP11.23□□□□□ -0.61
SKP1-201ENST00000328392 IFNLR1Q8IU57 520 aaPredicted RBP11.2□□□□□ -0.62
SKP1-201ENST00000328392 ZRANB1Q9UGI0 708 aa11.2□□□□□ -0.62
SKP1-201ENST00000328392 RASEFQ8IZ41 740 aa11.19□□□□□ -0.62
SKP1-201ENST00000328392 ZBTB47Q9UFB7 747 aaPredicted RBP11.19□□□□□ -0.62
SKP1-201ENST00000328392 KLHL34Q8N239 644 aa11.18□□□□□ -0.62
SKP1-201ENST00000328392 NUBP1P53384 320 aa11.17□□□□□ -0.62
SKP1-201ENST00000328392 TSPYL2Q9H2G4 693 aaPredicted RBP11.17□□□□□ -0.62
SKP1-201ENST00000328392 PAK3O75914 559 aaPredicted RBP11.13□□□□□ -0.63
SKP1-201ENST00000328392 PHF12Q96QT6 1004 aa11.12□□□□□ -0.63
SKP1-201ENST00000328392 GABBR2O75899 941 aa11.11□□□□□ -0.63
SKP1-201ENST00000328392 ZNF579Q8NAF0 562 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms