RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 NISCHQ9Y2I1 1504 aa25.25■■□□□ 1.63
LDLR-214ENST00000560628 ABCC9O60706 1549 aa22.54■■□□□ 1.2
LDLR-214ENST00000560628 CCDC180Q9P1Z9 1646 aa22.48■■□□□ 1.19
LDLR-214ENST00000560628 DCAF8L2P0C7V8 631 aa21.47■■□□□ 1.03
LDLR-214ENST00000560628 RB1CC1Q8TDY2 1594 aa21.4■■□□□ 1.02
LDLR-214ENST00000560628 NACADO15069 1562 aa21.29■■□□□ 1
LDLR-214ENST00000560628 PABPN1Q86U42 306 aaKnown RBP eCLIP21.1■□□□□ 0.97
LDLR-214ENST00000560628 DNAJC5BQ9UF47 199 aa21.1■□□□□ 0.97
LDLR-214ENST00000560628 MYO15BQ96JP2 1530 aa21■□□□□ 0.95
LDLR-214ENST00000560628 ZCCHC6Q5VYS8 1495 aaKnown RBP20.92■□□□□ 0.94
LDLR-214ENST00000560628 UNC13AQ9UPW8 1703 aa20.87■□□□□ 0.93
LDLR-214ENST00000560628 DCAF1Q9Y4B6 1507 aa20.79■□□□□ 0.92
LDLR-214ENST00000560628 BICRAQ9NZM4 1560 aa20.79■□□□□ 0.92
LDLR-214ENST00000560628 SCRIBQ14160 1630 aa20.61■□□□□ 0.89
LDLR-214ENST00000560628 SHROOM4Q9ULL8 1493 aa20.44■□□□□ 0.86
LDLR-214ENST00000560628 CC2D2AQ9P2K1 1620 aa20.3■□□□□ 0.84
LDLR-214ENST00000560628 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
LDLR-214ENST00000560628 CECR2Q9BXF3 1484 aa20.26■□□□□ 0.83
LDLR-214ENST00000560628 NCAPD3P42695 1498 aa19.7■□□□□ 0.74
LDLR-214ENST00000560628 ATAD2BQ9ULI0 1458 aa19.67■□□□□ 0.74
LDLR-214ENST00000560628 SMARCA4P51532 1647 aa19.63■□□□□ 0.73
LDLR-214ENST00000560628 SMARCA2P51531 1590 aa19.57■□□□□ 0.72
LDLR-214ENST00000560628 BAZ1AQ9NRL2 1556 aaPredicted RBP19.56■□□□□ 0.72
LDLR-214ENST00000560628 HMGXB3Q12766 1538 aa19.5■□□□□ 0.71
LDLR-214ENST00000560628 MROH2BQ7Z745 1585 aa19.49■□□□□ 0.71
LDLR-214ENST00000560628 BAZ1BQ9UIG0 1483 aaKnown RBP19.48■□□□□ 0.71
LDLR-214ENST00000560628 ERCC6Q03468 1493 aa19.43■□□□□ 0.7
LDLR-214ENST00000560628 PEG3Q9GZU2 1588 aa19.4■□□□□ 0.7
LDLR-214ENST00000560628 NESP48681 1621 aa19.4■□□□□ 0.7
LDLR-214ENST00000560628 CUX2O14529 1486 aa19.28■□□□□ 0.68
LDLR-214ENST00000560628 DNAJC5Q9H3Z4 198 aa19.24■□□□□ 0.67
LDLR-214ENST00000560628 WIZO95785 1651 aa19.24■□□□□ 0.67
LDLR-214ENST00000560628 LAMC3Q9Y6N6 1575 aa19.18■□□□□ 0.66
LDLR-214ENST00000560628 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
LDLR-214ENST00000560628 CADPSQ9ULU8 1353 aa19.15■□□□□ 0.66
LDLR-214ENST00000560628 PDS5BQ9NTI5 1447 aa19.14■□□□□ 0.65
LDLR-214ENST00000560628 THOC2Q8NI27 1593 aaKnown RBP19.06■□□□□ 0.64
LDLR-214ENST00000560628 KIF21AQ7Z4S6 1674 aa19.05■□□□□ 0.64
LDLR-214ENST00000560628 TOP2AP11388 1531 aaKnown RBP18.97■□□□□ 0.63
LDLR-214ENST00000560628 MRC2Q9UBG0 1479 aa18.94■□□□□ 0.62
LDLR-214ENST00000560628 CFTRP13569 1480 aa18.92■□□□□ 0.62
LDLR-214ENST00000560628 FANCD2Q9BXW9 1451 aa18.9■□□□□ 0.62
LDLR-214ENST00000560628 CEP164Q9UPV0 1460 aa18.9■□□□□ 0.62
LDLR-214ENST00000560628 WDR62O43379 1518 aa18.84■□□□□ 0.61
LDLR-214ENST00000560628 CCDC88BA6NC98 1476 aa18.83■□□□□ 0.6
LDLR-214ENST00000560628 URB2Q14146 1524 aaKnown RBP18.74■□□□□ 0.59
LDLR-214ENST00000560628 PRDM2Q13029 1718 aa18.6■□□□□ 0.57
LDLR-214ENST00000560628 TOPBP1Q92547 1522 aa18.55■□□□□ 0.56
LDLR-214ENST00000560628 SUPT5HO00267 1087 aaKnown RBP18.55■□□□□ 0.56
LDLR-214ENST00000560628 OSCARQ8IYS5 282 aa18.55■□□□□ 0.56
LDLR-214ENST00000560628 TRIM41Q8WV44 630 aa18.52■□□□□ 0.56
LDLR-214ENST00000560628 IFT140Q96RY7 1462 aa18.52■□□□□ 0.55
LDLR-214ENST00000560628 ZNF608Q9ULD9 1512 aaPredicted RBP18.51■□□□□ 0.55
LDLR-214ENST00000560628 ABCC8Q09428 1581 aa18.5■□□□□ 0.55
LDLR-214ENST00000560628 DNMBPQ6XZF7 1577 aa18.46■□□□□ 0.55
LDLR-214ENST00000560628 AQRO60306 1485 aaKnown RBP eCLIP18.39■□□□□ 0.544e-7■■■■□ 23.1
LDLR-214ENST00000560628 POLA1P09884 1462 aaPredicted RBP18.37■□□□□ 0.53
LDLR-214ENST00000560628 RAD54L2Q9Y4B4 1467 aa18.36■□□□□ 0.53
LDLR-214ENST00000560628 SOGA1O94964 1423 aa18.35■□□□□ 0.53
LDLR-214ENST00000560628 TARBP1Q13395 1621 aaKnown RBP18.34■□□□□ 0.53
LDLR-214ENST00000560628 EIF4G3O43432 1585 aaKnown RBP18.33■□□□□ 0.52
LDLR-214ENST00000560628 TDRD9Q8NDG6 1382 aaKnown RBP18.32■□□□□ 0.52
LDLR-214ENST00000560628 FBLN2P98095 1184 aa18.32■□□□□ 0.52
LDLR-214ENST00000560628 CUX1P39880 1505 aa18.28■□□□□ 0.52
LDLR-214ENST00000560628 FGD5Q6ZNL6 1462 aa18.28■□□□□ 0.52
LDLR-214ENST00000560628 RIMBP3CA6NJZ7 1639 aa18.18■□□□□ 0.5
LDLR-214ENST00000560628 RIMBP3BA6NNM3 1639 aa18.18■□□□□ 0.5
LDLR-214ENST00000560628 RIMBP3Q9UFD9 1639 aa18.18■□□□□ 0.5
LDLR-214ENST00000560628 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
LDLR-214ENST00000560628 SNAPC4Q5SXM2 1469 aa18.16■□□□□ 0.5
LDLR-214ENST00000560628 CHD1O14646 1710 aa18.16■□□□□ 0.5
LDLR-214ENST00000560628 ARHGEF11O15085 1522 aa18.15■□□□□ 0.5
LDLR-214ENST00000560628 CYB5RLQ6IPT4 315 aa18.15■□□□□ 0.5
LDLR-214ENST00000560628 GRIN2BQ13224 1484 aa18.13■□□□□ 0.49
LDLR-214ENST00000560628 GAPVD1Q14C86 1478 aa18.09■□□□□ 0.49
LDLR-214ENST00000560628 WDR97A6NE52 1622 aa18.09■□□□□ 0.49
LDLR-214ENST00000560628 MAGI1Q96QZ7 1491 aaPredicted RBP18.07■□□□□ 0.48
LDLR-214ENST00000560628 ABCA10Q8WWZ4 1543 aa18.06■□□□□ 0.48
LDLR-214ENST00000560628 WRNQ14191 1432 aaPredicted RBP eCLIP18.06■□□□□ 0.48
LDLR-214ENST00000560628 SYNJ2O15056 1496 aa18.03■□□□□ 0.48
LDLR-214ENST00000560628 ARAP1Q96P48 1450 aa18.01■□□□□ 0.47
LDLR-214ENST00000560628 SYNJ1O43426 1573 aa17.99■□□□□ 0.47
LDLR-214ENST00000560628 TOP2BQ02880 1626 aa17.98■□□□□ 0.47
LDLR-214ENST00000560628 PBRM1Q86U86 1689 aa17.98■□□□□ 0.47
LDLR-214ENST00000560628 ABCA5Q8WWZ7 1642 aa17.98■□□□□ 0.47
LDLR-214ENST00000560628 CLASP1Q7Z460 1538 aa17.97■□□□□ 0.47
LDLR-214ENST00000560628 BIVM-ERCC5R4GMW8 1640 aa17.95■□□□□ 0.46
LDLR-214ENST00000560628 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
LDLR-214ENST00000560628 GRIN2AQ12879 1464 aa17.88■□□□□ 0.45
LDLR-214ENST00000560628 FHAD1B1AJZ9 1412 aa17.86■□□□□ 0.45
LDLR-214ENST00000560628 ADAMTS12P58397 1594 aa17.84■□□□□ 0.45
LDLR-214ENST00000560628 ERICH3Q5RHP9 1530 aa17.82■□□□□ 0.44
LDLR-214ENST00000560628 NUP160Q12769 1436 aa17.81■□□□□ 0.44
LDLR-214ENST00000560628 CEP170Q5SW79 1584 aa17.79■□□□□ 0.44
LDLR-214ENST00000560628 ERCC6L2Q5T890 1561 aa17.76■□□□□ 0.43
LDLR-214ENST00000560628 JPH4Q96JJ6 628 aa17.74■□□□□ 0.43
LDLR-214ENST00000560628 IGF1RP08069 1367 aa17.73■□□□□ 0.43
LDLR-214ENST00000560628 KIF27Q86VH2 1401 aa17.71■□□□□ 0.43
LDLR-214ENST00000560628 PRG4Q92954 1404 aaPredicted RBP17.68■□□□□ 0.42
LDLR-214ENST00000560628 SHROOM2Q13796 1616 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms