Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS11Q9H270 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VPS11Q9H270 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS11Q9H270 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VPS11Q9H270 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
VPS11Q9H270 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
VPS11Q9H270 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS11Q9H270 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
VPS11Q9H270 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS11Q9H270 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS11Q9H270 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
VPS11Q9H270 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
VPS11Q9H270 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC23.91■■□□□ 1.42
VPS11Q9H270 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS11Q9H270 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.9■■□□□ 1.42
VPS11Q9H270 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VPS11Q9H270 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VPS11Q9H270 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
VPS11Q9H270 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
VPS11Q9H270 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.9■■□□□ 1.42
VPS11Q9H270 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS11Q9H270 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.89■■□□□ 1.42
VPS11Q9H270 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
VPS11Q9H270 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS11Q9H270 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
VPS11Q9H270 EED-207ENST00000528180 1745 ntTSL 5 BASIC23.89■■□□□ 1.41
VPS11Q9H270 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC23.89■■□□□ 1.41
VPS11Q9H270 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC23.89■■□□□ 1.41
VPS11Q9H270 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
VPS11Q9H270 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
VPS11Q9H270 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.88■■□□□ 1.41
VPS11Q9H270 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 AC126177.7-201ENST00000547904 679 ntBASIC23.88■■□□□ 1.41
VPS11Q9H270 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
VPS11Q9H270 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
VPS11Q9H270 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
VPS11Q9H270 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
VPS11Q9H270 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
VPS11Q9H270 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC23.87■■□□□ 1.41
VPS11Q9H270 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC23.87■■□□□ 1.41
VPS11Q9H270 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.87■■□□□ 1.41
VPS11Q9H270 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.87■■□□□ 1.41
VPS11Q9H270 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.86■■□□□ 1.41
VPS11Q9H270 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
VPS11Q9H270 AP003733.4-201ENST00000623785 1697 ntBASIC23.86■■□□□ 1.41
VPS11Q9H270 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
VPS11Q9H270 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
VPS11Q9H270 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
VPS11Q9H270 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.85■■□□□ 1.41
VPS11Q9H270 ABHD17AP4-201ENST00000411545 909 ntBASIC23.84■■□□□ 1.41
VPS11Q9H270 GDI1-215ENST00000630693 786 ntTSL 4 BASIC23.84■■□□□ 1.41
VPS11Q9H270 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.83■■□□□ 1.41
VPS11Q9H270 LINC01124-201ENST00000409786 2117 ntBASIC23.83■■□□□ 1.41
VPS11Q9H270 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS11Q9H270 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
VPS11Q9H270 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
VPS11Q9H270 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.83■■□□□ 1.41
VPS11Q9H270 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
VPS11Q9H270 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC23.83■■□□□ 1.4
VPS11Q9H270 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.4
VPS11Q9H270 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS11Q9H270 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC23.82■■□□□ 1.4
VPS11Q9H270 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS11Q9H270 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS11Q9H270 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
VPS11Q9H270 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
VPS11Q9H270 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS11Q9H270 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.81■■□□□ 1.4
VPS11Q9H270 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS11Q9H270 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS11Q9H270 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
VPS11Q9H270 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
VPS11Q9H270 MIR3648-2-201ENST00000581792 180 ntBASIC23.81■■□□□ 1.4
VPS11Q9H270 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.81■■□□□ 1.4
VPS11Q9H270 MIR3648-1-201ENST00000615959 180 ntBASIC23.81■■□□□ 1.4
VPS11Q9H270 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
VPS11Q9H270 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.81■■□□□ 1.4
VPS11Q9H270 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.8■■□□□ 1.4
VPS11Q9H270 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 AC012676.1-201ENST00000574705 1949 ntBASIC23.8■■□□□ 1.4
VPS11Q9H270 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
VPS11Q9H270 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms