RNA–Protein interactions for RNA: ENST00000422760.1

LSM8-203, Transcript of LSM8 homolog, U6 small nuclear RNA associated, humanhuman

TSL 1 (best) BASIC

Gene LSM8, Length 1,920 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM8-203ENST00000422760 NISCHQ9Y2I1 1504 aa50.98■■■■■ 5.75
LSM8-203ENST00000422760 CCDC180Q9P1Z9 1646 aa44.25■■■■■ 4.67
LSM8-203ENST00000422760 ZCCHC6Q5VYS8 1495 aaKnown RBP42.94■■■■■ 4.46
LSM8-203ENST00000422760 DCAF1Q9Y4B6 1507 aa42.09■■■■■ 4.33
LSM8-203ENST00000422760 SHROOM4Q9ULL8 1493 aa42.01■■■■■ 4.32
LSM8-203ENST00000422760 DCAF8L2P0C7V8 631 aa41.97■■■■■ 4.31
LSM8-203ENST00000422760 ABCC9O60706 1549 aa41.5■■■■■ 4.23
LSM8-203ENST00000422760 MYO15BQ96JP2 1530 aa41.4■■■■■ 4.22
LSM8-203ENST00000422760 NACADO15069 1562 aa41.06■■■■■ 4.16
LSM8-203ENST00000422760 SCRIBQ14160 1630 aa40.85■■■■■ 4.13
LSM8-203ENST00000422760 RB1CC1Q8TDY2 1594 aa40.63■■■■■ 4.09
LSM8-203ENST00000422760 SUPT5HO00267 1087 aaKnown RBP40.57■■■■■ 4.09
LSM8-203ENST00000422760 UNC13AQ9UPW8 1703 aa39.97■■■■□ 3.99
LSM8-203ENST00000422760 RSF1Q96T23 1441 aaPredicted RBP39.73■■■■□ 3.95
LSM8-203ENST00000422760 CECR2Q9BXF3 1484 aa39.62■■■■□ 3.93
LSM8-203ENST00000422760 BICRAQ9NZM4 1560 aa39.46■■■■□ 3.91
LSM8-203ENST00000422760 MROH2BQ7Z745 1585 aa39.45■■■■□ 3.91
LSM8-203ENST00000422760 BAZ1AQ9NRL2 1556 aaPredicted RBP39.33■■■■□ 3.89
LSM8-203ENST00000422760 PABPN1Q86U42 306 aaKnown RBP eCLIP39.2■■■■□ 3.87
LSM8-203ENST00000422760 WIZO95785 1651 aa39.19■■■■□ 3.86
LSM8-203ENST00000422760 SMARCA4P51532 1647 aa39.14■■■■□ 3.86
LSM8-203ENST00000422760 CHIC1Q5VXU3 224 aa39.03■■■■□ 3.84
LSM8-203ENST00000422760 TOP2AP11388 1531 aaKnown RBP38.73■■■■□ 3.79
LSM8-203ENST00000422760 PEG3Q9GZU2 1588 aa38.59■■■■□ 3.77
LSM8-203ENST00000422760 SMARCA2P51531 1590 aa38.41■■■■□ 3.74
LSM8-203ENST00000422760 ATAD2BQ9ULI0 1458 aa38.34■■■■□ 3.73
LSM8-203ENST00000422760 CCDC88BA6NC98 1476 aa38.33■■■■□ 3.73
LSM8-203ENST00000422760 EIF4G1Q04637 1599 aaKnown RBP38.32■■■■□ 3.73
LSM8-203ENST00000422760 BAZ1BQ9UIG0 1483 aaKnown RBP38.16■■■■□ 3.7
LSM8-203ENST00000422760 TRIM41Q8WV44 630 aa38.06■■■■□ 3.68
LSM8-203ENST00000422760 HMGXB3Q12766 1538 aa37.92■■■■□ 3.66
LSM8-203ENST00000422760 NCAPD3P42695 1498 aa37.89■■■■□ 3.66
LSM8-203ENST00000422760 ABCC8Q09428 1581 aa37.77■■■■□ 3.64
LSM8-203ENST00000422760 LOC105371045A0A1W2PR82 267 aa37.59■■■■□ 3.61
LSM8-203ENST00000422760 CC2D2AQ9P2K1 1620 aa37.56■■■■□ 3.6
LSM8-203ENST00000422760 FAM9AQ8IZU1 332 aaPredicted RBP37.46■■■■□ 3.59
LSM8-203ENST00000422760 WRNQ14191 1432 aaPredicted RBP eCLIP37.38■■■■□ 3.57
LSM8-203ENST00000422760 SYNJ1O43426 1573 aa37.28■■■■□ 3.56
LSM8-203ENST00000422760 CFTRP13569 1480 aa37.2■■■■□ 3.55
LSM8-203ENST00000422760 PRDM2Q13029 1718 aa37.12■■■■□ 3.53
LSM8-203ENST00000422760 SOGA1O94964 1423 aa37.1■■■■□ 3.53
LSM8-203ENST00000422760 TOP2BQ02880 1626 aa37.05■■■■□ 3.52
LSM8-203ENST00000422760 EEA1Q15075 1411 aa37.01■■■■□ 3.52
LSM8-203ENST00000422760 BIVM-ERCC5R4GMW8 1640 aa37.01■■■■□ 3.51
LSM8-203ENST00000422760 HRCP23327 699 aa36.98■■■■□ 3.51
LSM8-203ENST00000422760 EHMT2Q96KQ7 1210 aa36.97■■■■□ 3.51
LSM8-203ENST00000422760 CADPSQ9ULU8 1353 aa36.96■■■■□ 3.51
LSM8-203ENST00000422760 RUSC2Q8N2Y8 1516 aa36.95■■■■□ 3.51
LSM8-203ENST00000422760 CUX1P39880 1505 aa36.86■■■■□ 3.49
LSM8-203ENST00000422760 CSRNP3Q8WYN3 585 aa36.78■■■■□ 3.48
LSM8-203ENST00000422760 PCGF6Q9BYE7 350 aa36.77■■■■□ 3.48
LSM8-203ENST00000422760 FANCD2Q9BXW9 1451 aa36.6■■■■□ 3.45
LSM8-203ENST00000422760 KIF21BO75037 1637 aa36.6■■■■□ 3.45
LSM8-203ENST00000422760 GOLGA3Q08378 1498 aa36.6■■■■□ 3.45
LSM8-203ENST00000422760 NESP48681 1621 aa36.6■■■■□ 3.45
LSM8-203ENST00000422760 LAMC3Q9Y6N6 1575 aa36.56■■■■□ 3.44
LSM8-203ENST00000422760 TRIM26Q12899 539 aaPredicted RBP36.54■■■■□ 3.44
LSM8-203ENST00000422760 CEP164Q9UPV0 1460 aa36.54■■■■□ 3.44
LSM8-203ENST00000422760 TNIKQ9UKE5 1360 aa36.52■■■■□ 3.44
LSM8-203ENST00000422760 DNAJC5BQ9UF47 199 aa36.5■■■■□ 3.43
LSM8-203ENST00000422760 CEP162Q5TB80 1403 aa36.43■■■■□ 3.42
LSM8-203ENST00000422760 UBTFP17480 764 aaKnown RBP36.39■■■■□ 3.42
LSM8-203ENST00000422760 FGD5Q6ZNL6 1462 aa36.38■■■■□ 3.41
LSM8-203ENST00000422760 KIF27Q86VH2 1401 aa36.37■■■■□ 3.41
LSM8-203ENST00000422760 DNMBPQ6XZF7 1577 aa36.36■■■■□ 3.41
LSM8-203ENST00000422760 RAPGEF2Q9Y4G8 1499 aa36.33■■■■□ 3.41
LSM8-203ENST00000422760 TOPBP1Q92547 1522 aa36.27■■■■□ 3.4
LSM8-203ENST00000422760 PRXQ9BXM0 1461 aa36.25■■■■□ 3.39
LSM8-203ENST00000422760 ERICH3Q5RHP9 1530 aa36.25■■■■□ 3.39
LSM8-203ENST00000422760 PDS5BQ9NTI5 1447 aa36.23■■■■□ 3.39
LSM8-203ENST00000422760 CUX2O14529 1486 aa36.22■■■■□ 3.39
LSM8-203ENST00000422760 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
LSM8-203ENST00000422760 URB2Q14146 1524 aaKnown RBP36.14■■■■□ 3.38
LSM8-203ENST00000422760 POLA1P09884 1462 aaPredicted RBP36.13■■■■□ 3.37
LSM8-203ENST00000422760 RAD54L2Q9Y4B4 1467 aa36.04■■■■□ 3.36
LSM8-203ENST00000422760 ABCA10Q8WWZ4 1543 aa36.03■■■■□ 3.36
LSM8-203ENST00000422760 CLIP1P30622 1438 aa36.03■■■■□ 3.36
LSM8-203ENST00000422760 IGF1RP08069 1367 aa35.98■■■■□ 3.35
LSM8-203ENST00000422760 ZEB1P37275 1124 aaPredicted RBP35.98■■■■□ 3.35
LSM8-203ENST00000422760 WDR97A6NE52 1622 aa35.95■■■■□ 3.34
LSM8-203ENST00000422760 PPARGC1BQ86YN6 1023 aaKnown RBP35.85■■■■□ 3.33
LSM8-203ENST00000422760 CARMIL1Q5VZK9 1371 aa35.82■■■■□ 3.32
LSM8-203ENST00000422760 MRC2Q9UBG0 1479 aa35.78■■■■□ 3.32
LSM8-203ENST00000422760 VPS8Q8N3P4 1428 aa35.77■■■■□ 3.32
LSM8-203ENST00000422760 ABCA5Q8WWZ7 1642 aa35.75■■■■□ 3.31
LSM8-203ENST00000422760 RANGAP1P46060 587 aaPredicted RBP35.75■■■■□ 3.31
LSM8-203ENST00000422760 CUL7Q14999 1698 aa35.73■■■■□ 3.31
LSM8-203ENST00000422760 TARBP1Q13395 1621 aaKnown RBP35.71■■■■□ 3.31
LSM8-203ENST00000422760 ARAP1Q96P48 1450 aa35.65■■■■□ 3.3
LSM8-203ENST00000422760 TDRD9Q8NDG6 1382 aaKnown RBP35.62■■■■□ 3.29
LSM8-203ENST00000422760 GAPVD1Q14C86 1478 aa35.61■■■■□ 3.29
LSM8-203ENST00000422760 WDR62O43379 1518 aa35.6■■■■□ 3.29
LSM8-203ENST00000422760 ARHGAP35Q9NRY4 1499 aa35.55■■■■□ 3.28
LSM8-203ENST00000422760 TTBK1Q5TCY1 1321 aaPredicted RBP35.51■■■■□ 3.28
LSM8-203ENST00000422760 ERCC6Q03468 1493 aa35.51■■■■□ 3.27
LSM8-203ENST00000422760 PBRM1Q86U86 1689 aa35.45■■■■□ 3.27
LSM8-203ENST00000422760 CTTNBP2Q8WZ74 1663 aa35.45■■■■□ 3.27
LSM8-203ENST00000422760 THOC2Q8NI27 1593 aaKnown RBP35.44■■■■□ 3.26
LSM8-203ENST00000422760 IFT140Q96RY7 1462 aa35.39■■■■□ 3.26
LSM8-203ENST00000422760 APLP2Q06481 763 aa35.35■■■■□ 3.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms