Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
TTC3P53804 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
TTC3P53804 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC26.06■■□□□ 1.76
TTC3P53804 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.06■■□□□ 1.76
TTC3P53804 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
TTC3P53804 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
TTC3P53804 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC3P53804 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
TTC3P53804 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC3P53804 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC3P53804 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
TTC3P53804 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC26.05■■□□□ 1.76
TTC3P53804 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.05■■□□□ 1.76
TTC3P53804 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC3P53804 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
TTC3P53804 MIR4281-201ENST00000580852 62 ntBASIC26.05■■□□□ 1.76
TTC3P53804 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.05■■□□□ 1.76
TTC3P53804 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
TTC3P53804 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
TTC3P53804 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
TTC3P53804 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC3P53804 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.04■■□□□ 1.76
TTC3P53804 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
TTC3P53804 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC3P53804 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC3P53804 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TTC3P53804 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
TTC3P53804 AC021242.3-201ENST00000607598 1377 ntBASIC26.03■■□□□ 1.76
TTC3P53804 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC3P53804 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
TTC3P53804 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
TTC3P53804 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.03■■□□□ 1.76
TTC3P53804 AC120024.1-201ENST00000562672 995 ntBASIC26.03■■□□□ 1.76
TTC3P53804 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC3P53804 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.03■■□□□ 1.76
TTC3P53804 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
TTC3P53804 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TTC3P53804 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.02■■□□□ 1.76
TTC3P53804 AC008406.3-201ENST00000620001 1374 ntBASIC26.02■■□□□ 1.76
TTC3P53804 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.02■■□□□ 1.76
TTC3P53804 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
TTC3P53804 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.02■■□□□ 1.76
TTC3P53804 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
TTC3P53804 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TTC3P53804 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
TTC3P53804 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
TTC3P53804 AC131281.2-201ENST00000520478 145 ntBASIC26■■□□□ 1.75
TTC3P53804 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26■■□□□ 1.75
TTC3P53804 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26■■□□□ 1.75
TTC3P53804 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TTC3P53804 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.99■■□□□ 1.75
TTC3P53804 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
TTC3P53804 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.99■■□□□ 1.75
TTC3P53804 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.98■■□□□ 1.75
TTC3P53804 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.98■■□□□ 1.75
TTC3P53804 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
TTC3P53804 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.98■■□□□ 1.75
TTC3P53804 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.98■■□□□ 1.75
TTC3P53804 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.98■■□□□ 1.75
TTC3P53804 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.97■■□□□ 1.75
TTC3P53804 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC3P53804 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
TTC3P53804 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC25.97■■□□□ 1.75
TTC3P53804 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.97■■□□□ 1.75
TTC3P53804 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
TTC3P53804 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TTC3P53804 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TTC3P53804 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
TTC3P53804 AC092028.1-203ENST00000608262 953 ntBASIC25.95■■□□□ 1.75
TTC3P53804 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.95■■□□□ 1.75
TTC3P53804 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
TTC3P53804 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TTC3P53804 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
TTC3P53804 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TTC3P53804 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
TTC3P53804 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC25.94■■□□□ 1.74
TTC3P53804 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC25.94■■□□□ 1.74
TTC3P53804 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
TTC3P53804 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.93■■□□□ 1.74
TTC3P53804 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC25.93■■□□□ 1.74
TTC3P53804 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
TTC3P53804 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
TTC3P53804 SENP5-202ENST00000419026 973 ntTSL 3 BASIC25.92■■□□□ 1.74
TTC3P53804 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC25.92■■□□□ 1.74
TTC3P53804 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.92■■□□□ 1.74
TTC3P53804 AP004609.3-201ENST00000610705 1884 ntBASIC25.91■■□□□ 1.74
TTC3P53804 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TTC3P53804 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.91■■□□□ 1.74
TTC3P53804 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC25.91■■□□□ 1.74
TTC3P53804 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC25.91■■□□□ 1.74
TTC3P53804 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TTC3P53804 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.9■■□□□ 1.74
TTC3P53804 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.9■■□□□ 1.74
TTC3P53804 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
TTC3P53804 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.9■■□□□ 1.74
TTC3P53804 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC25.9■■□□□ 1.74
TTC3P53804 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TTC3P53804 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.89■■□□□ 1.74
TTC3P53804 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.89■■□□□ 1.74
TTC3P53804 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.89■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms