Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.26■■□□□ 1.15
HMGN4O00479 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGN4O00479 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGN4O00479 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
HMGN4O00479 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGN4O00479 SLC6A10P-202ENST00000431994 2058 ntBASIC22.24■■□□□ 1.15
HMGN4O00479 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGN4O00479 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGN4O00479 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
HMGN4O00479 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGN4O00479 RP9P-202ENST00000450133 1212 ntBASIC22.24■■□□□ 1.15
HMGN4O00479 MBP-237ENST00000579129 1052 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGN4O00479 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
HMGN4O00479 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.23■■□□□ 1.15
HMGN4O00479 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGN4O00479 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGN4O00479 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.23■■□□□ 1.15
HMGN4O00479 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGN4O00479 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC22.23■■□□□ 1.15
HMGN4O00479 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HMGN4O00479 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
HMGN4O00479 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HMGN4O00479 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGN4O00479 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGN4O00479 AC093536.1-201ENST00000569153 554 ntBASIC22.21■■□□□ 1.15
HMGN4O00479 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGN4O00479 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
HMGN4O00479 AL139125.2-201ENST00000623134 1869 ntBASIC22.21■■□□□ 1.15
HMGN4O00479 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC22.21■■□□□ 1.15
HMGN4O00479 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
HMGN4O00479 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
HMGN4O00479 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.2■■□□□ 1.14
HMGN4O00479 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.19■■□□□ 1.14
HMGN4O00479 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.19■■□□□ 1.14
HMGN4O00479 AC007029.1-201ENST00000604183 313 ntBASIC22.19■■□□□ 1.14
HMGN4O00479 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
HMGN4O00479 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
HMGN4O00479 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
HMGN4O00479 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGN4O00479 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGN4O00479 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
HMGN4O00479 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.18■■□□□ 1.14
HMGN4O00479 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGN4O00479 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGN4O00479 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGN4O00479 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
HMGN4O00479 GPX1-201ENST00000419349 1106 ntBASIC22.18■■□□□ 1.14
HMGN4O00479 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.18■■□□□ 1.14
HMGN4O00479 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
HMGN4O00479 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
HMGN4O00479 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGN4O00479 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC22.17■■□□□ 1.14
HMGN4O00479 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
HMGN4O00479 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.17■■□□□ 1.14
HMGN4O00479 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
HMGN4O00479 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGN4O00479 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGN4O00479 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGN4O00479 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.16■■□□□ 1.14
HMGN4O00479 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC22.16■■□□□ 1.14
HMGN4O00479 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.16■■□□□ 1.14
HMGN4O00479 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGN4O00479 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGN4O00479 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGN4O00479 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
HMGN4O00479 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
HMGN4O00479 HES4-202ENST00000428771 1040 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGN4O00479 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
HMGN4O00479 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms