Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.07■□□□□ 0.64
COL6A5A8TX70 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A5A8TX70 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.07■□□□□ 0.64
COL6A5A8TX70 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A5A8TX70 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL6A5A8TX70 AC022517.1-201ENST00000592429 346 ntBASIC19.07■□□□□ 0.64
COL6A5A8TX70 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A5A8TX70 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A5A8TX70 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A5A8TX70 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL6A5A8TX70 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.06■□□□□ 0.64
COL6A5A8TX70 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.06■□□□□ 0.64
COL6A5A8TX70 RASA4CP-201ENST00000424092 1398 ntBASIC19.06■□□□□ 0.64
COL6A5A8TX70 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.05■□□□□ 0.64
COL6A5A8TX70 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.05■□□□□ 0.64
COL6A5A8TX70 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.05■□□□□ 0.64
COL6A5A8TX70 AL136162.1-201ENST00000607711 1078 ntBASIC19.05■□□□□ 0.64
COL6A5A8TX70 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A5A8TX70 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A5A8TX70 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL6A5A8TX70 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
COL6A5A8TX70 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A5A8TX70 WHAMMP3-201ENST00000611636 1609 ntBASIC19.04■□□□□ 0.64
COL6A5A8TX70 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A5A8TX70 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.04■□□□□ 0.64
COL6A5A8TX70 AC034268.1-201ENST00000441047 882 ntBASIC19.04■□□□□ 0.64
COL6A5A8TX70 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A5A8TX70 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC19.04■□□□□ 0.64
COL6A5A8TX70 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A5A8TX70 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.04■□□□□ 0.64
COL6A5A8TX70 IKBKGP1-201ENST00000612193 1073 ntBASIC19.04■□□□□ 0.64
COL6A5A8TX70 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
COL6A5A8TX70 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL6A5A8TX70 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A5A8TX70 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A5A8TX70 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL6A5A8TX70 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A5A8TX70 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A5A8TX70 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A5A8TX70 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A5A8TX70 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A5A8TX70 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A5A8TX70 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A5A8TX70 AP001330.3-201ENST00000520123 633 ntBASIC19.02■□□□□ 0.64
COL6A5A8TX70 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A5A8TX70 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A5A8TX70 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A5A8TX70 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.02■□□□□ 0.63
COL6A5A8TX70 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A5A8TX70 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.02■□□□□ 0.63
COL6A5A8TX70 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A5A8TX70 AC091305.1-201ENST00000479476 895 ntBASIC19.01■□□□□ 0.63
COL6A5A8TX70 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A5A8TX70 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A5A8TX70 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A5A8TX70 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL6A5A8TX70 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
COL6A5A8TX70 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19■□□□□ 0.63
COL6A5A8TX70 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A5A8TX70 AP004833.2-201ENST00000532228 1454 ntBASIC18.99■□□□□ 0.63
COL6A5A8TX70 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL6A5A8TX70 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A5A8TX70 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A5A8TX70 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.99■□□□□ 0.63
COL6A5A8TX70 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A5A8TX70 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A5A8TX70 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A5A8TX70 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A5A8TX70 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A5A8TX70 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A5A8TX70 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A5A8TX70 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
COL6A5A8TX70 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
COL6A5A8TX70 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC18.97■□□□□ 0.63
COL6A5A8TX70 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A5A8TX70 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A5A8TX70 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC18.97■□□□□ 0.63
COL6A5A8TX70 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.97■□□□□ 0.63
COL6A5A8TX70 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.97■□□□□ 0.63
COL6A5A8TX70 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.97■□□□□ 0.63
COL6A5A8TX70 AC092437.1-201ENST00000624794 1048 ntBASIC18.97■□□□□ 0.63
COL6A5A8TX70 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A5A8TX70 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A5A8TX70 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A5A8TX70 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.96■□□□□ 0.63
COL6A5A8TX70 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.96■□□□□ 0.63
COL6A5A8TX70 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
COL6A5A8TX70 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A5A8TX70 KRT18P10-201ENST00000388836 1287 ntBASIC18.96■□□□□ 0.63
COL6A5A8TX70 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.96■□□□□ 0.63
COL6A5A8TX70 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.96■□□□□ 0.63
COL6A5A8TX70 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A5A8TX70 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.96■□□□□ 0.62
COL6A5A8TX70 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.95■□□□□ 0.62
COL6A5A8TX70 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A5A8TX70 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A5A8TX70 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A5A8TX70 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.95■□□□□ 0.62
COL6A5A8TX70 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A5A8TX70 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms