RNA–Protein interactions for RNA: ENST00000361309.5

CD47-202, Transcript of CD47 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD47, Length 1,285 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-202ENST00000361309 NISCHQ9Y2I1 1504 aa53.31■■■■■ 6.12
CD47-202ENST00000361309 ABCC9O60706 1549 aa48.15■■■■■ 5.3
CD47-202ENST00000361309 CCDC180Q9P1Z9 1646 aa47.96■■■■■ 5.27
CD47-202ENST00000361309 RB1CC1Q8TDY2 1594 aa45.74■■■■■ 4.91
CD47-202ENST00000361309 NACADO15069 1562 aa45.37■■■■■ 4.85
CD47-202ENST00000361309 DNAJC5BQ9UF47 199 aa45.35■■■■■ 4.85
CD47-202ENST00000361309 DCAF8L2P0C7V8 631 aa45.1■■■■■ 4.81
CD47-202ENST00000361309 UNC13AQ9UPW8 1703 aa44.83■■■■■ 4.77
CD47-202ENST00000361309 PABPN1Q86U42 306 aaKnown RBP eCLIP44.79■■■■■ 4.76
CD47-202ENST00000361309 MYO15BQ96JP2 1530 aa44.63■■■■■ 4.73
CD47-202ENST00000361309 BICRAQ9NZM4 1560 aa44.43■■■■■ 4.7
CD47-202ENST00000361309 ZCCHC6Q5VYS8 1495 aaKnown RBP44.13■■■■■ 4.65
CD47-202ENST00000361309 DCAF1Q9Y4B6 1507 aa44■■■■■ 4.63
CD47-202ENST00000361309 SHROOM4Q9ULL8 1493 aa43.74■■■■■ 4.59
CD47-202ENST00000361309 SCRIBQ14160 1630 aa43.7■■■■■ 4.59
CD47-202ENST00000361309 CC2D2AQ9P2K1 1620 aa43.51■■■■■ 4.56
CD47-202ENST00000361309 CECR2Q9BXF3 1484 aa43.38■■■■■ 4.53
CD47-202ENST00000361309 EIF4G1Q04637 1599 aaKnown RBP43.34■■■■■ 4.53
CD47-202ENST00000361309 NCAPD3P42695 1498 aa41.85■■■■■ 4.29
CD47-202ENST00000361309 DNAJC5Q9H3Z4 198 aa41.77■■■■■ 4.28
CD47-202ENST00000361309 ATAD2BQ9ULI0 1458 aa41.72■■■■■ 4.27
CD47-202ENST00000361309 SMARCA4P51532 1647 aa41.66■■■■■ 4.26
CD47-202ENST00000361309 SMARCA2P51531 1590 aa41.59■■■■■ 4.25
CD47-202ENST00000361309 ERCC6Q03468 1493 aa41.58■■■■■ 4.25
CD47-202ENST00000361309 CUX2O14529 1486 aa41.56■■■■■ 4.24
CD47-202ENST00000361309 HMGXB3Q12766 1538 aa41.54■■■■■ 4.24
CD47-202ENST00000361309 BAZ1AQ9NRL2 1556 aaPredicted RBP41.39■■■■■ 4.22
CD47-202ENST00000361309 NESP48681 1621 aa41.32■■■■■ 4.2
CD47-202ENST00000361309 BAZ1BQ9UIG0 1483 aaKnown RBP41.31■■■■■ 4.2
CD47-202ENST00000361309 PEG3Q9GZU2 1588 aa41.23■■■■■ 4.19
CD47-202ENST00000361309 MROH2BQ7Z745 1585 aa41.09■■■■■ 4.17
CD47-202ENST00000361309 LAMC3Q9Y6N6 1575 aa40.99■■■■■ 4.15
CD47-202ENST00000361309 THOC2Q8NI27 1593 aaKnown RBP40.95■■■■■ 4.15
CD47-202ENST00000361309 KIF21AQ7Z4S6 1674 aa40.84■■■■■ 4.13
CD47-202ENST00000361309 PDS5BQ9NTI5 1447 aa40.72■■■■■ 4.11
CD47-202ENST00000361309 WIZO95785 1651 aa40.64■■■■■ 4.1
CD47-202ENST00000361309 CADPSQ9ULU8 1353 aa40.58■■■■■ 4.09
CD47-202ENST00000361309 MRC2Q9UBG0 1479 aa40.39■■■■■ 4.06
CD47-202ENST00000361309 WDR62O43379 1518 aa40.32■■■■■ 4.04
CD47-202ENST00000361309 CEP164Q9UPV0 1460 aa40.2■■■■■ 4.03
CD47-202ENST00000361309 FANCD2Q9BXW9 1451 aa40.14■■■■■ 4.02
CD47-202ENST00000361309 RSF1Q96T23 1441 aaPredicted RBP40.14■■■■■ 4.02
CD47-202ENST00000361309 CFTRP13569 1480 aa40.07■■■■■ 4.01
CD47-202ENST00000361309 TOP2AP11388 1531 aaKnown RBP40.06■■■■■ 4
CD47-202ENST00000361309 TRIM41Q8WV44 630 aa39.89■■■■□ 3.98
CD47-202ENST00000361309 URB2Q14146 1524 aaKnown RBP39.84■■■■□ 3.97
CD47-202ENST00000361309 PRDM2Q13029 1718 aa39.79■■■■□ 3.96
CD47-202ENST00000361309 OSCARQ8IYS5 282 aa39.62■■■■□ 3.93
CD47-202ENST00000361309 CCDC88BA6NC98 1476 aa39.61■■■■□ 3.93
CD47-202ENST00000361309 IFT140Q96RY7 1462 aa39.39■■■■□ 3.9
CD47-202ENST00000361309 ZNF608Q9ULD9 1512 aaPredicted RBP39.38■■■■□ 3.89
CD47-202ENST00000361309 TOPBP1Q92547 1522 aa39.36■■■■□ 3.89
CD47-202ENST00000361309 ABCC8Q09428 1581 aa39.25■■■■□ 3.87
CD47-202ENST00000361309 DNMBPQ6XZF7 1577 aa39.21■■■■□ 3.87
CD47-202ENST00000361309 RIMBP3CA6NJZ7 1639 aa39.2■■■■□ 3.87
CD47-202ENST00000361309 RIMBP3BA6NNM3 1639 aa39.2■■■■□ 3.87
CD47-202ENST00000361309 RIMBP3Q9UFD9 1639 aa39.2■■■■□ 3.87
CD47-202ENST00000361309 EIF4G3O43432 1585 aaKnown RBP39.17■■■■□ 3.86
CD47-202ENST00000361309 TARBP1Q13395 1621 aaKnown RBP39.06■■■■□ 3.84
CD47-202ENST00000361309 ARHGEF11O15085 1522 aa39.01■■■■□ 3.84
CD47-202ENST00000361309 AQRO60306 1485 aaKnown RBP eCLIP38.99■■■■□ 3.83
CD47-202ENST00000361309 CHD1O14646 1710 aa38.98■■■■□ 3.83
CD47-202ENST00000361309 POLA1P09884 1462 aaPredicted RBP38.94■■■■□ 3.82
CD47-202ENST00000361309 RAD54L2Q9Y4B4 1467 aa38.82■■■■□ 3.81
CD47-202ENST00000361309 FBLN2P98095 1184 aa38.77■■■■□ 3.8
CD47-202ENST00000361309 SOGA1O94964 1423 aa38.76■■■■□ 3.8
CD47-202ENST00000361309 CYB5RLQ6IPT4 315 aa38.73■■■■□ 3.79
CD47-202ENST00000361309 TDRD9Q8NDG6 1382 aaKnown RBP38.71■■■■□ 3.79
CD47-202ENST00000361309 FGD5Q6ZNL6 1462 aa38.67■■■■□ 3.78
CD47-202ENST00000361309 CUX1P39880 1505 aa38.62■■■■□ 3.77
CD47-202ENST00000361309 ARAP1Q96P48 1450 aa38.61■■■■□ 3.77
CD47-202ENST00000361309 WDR97A6NE52 1622 aa38.61■■■■□ 3.77
CD47-202ENST00000361309 SNAPC4Q5SXM2 1469 aa38.59■■■■□ 3.77
CD47-202ENST00000361309 MAGI1Q96QZ7 1491 aaPredicted RBP38.46■■■■□ 3.75
CD47-202ENST00000361309 CLASP1Q7Z460 1538 aa38.45■■■■□ 3.75
CD47-202ENST00000361309 GRIN2BQ13224 1484 aa38.44■■■■□ 3.74
CD47-202ENST00000361309 CHMP7Q8WUX9 453 aaPredicted RBP38.44■■■■□ 3.74
CD47-202ENST00000361309 SYNJ1O43426 1573 aa38.41■■■■□ 3.74
CD47-202ENST00000361309 TRHP20396 242 aaPredicted RBP38.38■■■■□ 3.73
CD47-202ENST00000361309 PBRM1Q86U86 1689 aa38.37■■■■□ 3.73
CD47-202ENST00000361309 SYNJ2O15056 1496 aa38.34■■■■□ 3.73
CD47-202ENST00000361309 GAPVD1Q14C86 1478 aa38.29■■■■□ 3.72
CD47-202ENST00000361309 SUPT5HO00267 1087 aaKnown RBP38.23■■■■□ 3.71
CD47-202ENST00000361309 ABCA10Q8WWZ4 1543 aa38.21■■■■□ 3.71
CD47-202ENST00000361309 ABCA5Q8WWZ7 1642 aa38.2■■■■□ 3.71
CD47-202ENST00000361309 WRNQ14191 1432 aaPredicted RBP eCLIP38.01■■■■□ 3.68
CD47-202ENST00000361309 BIVM-ERCC5R4GMW8 1640 aa37.98■■■■□ 3.67
CD47-202ENST00000361309 GRIN2AQ12879 1464 aa37.96■■■■□ 3.67
CD47-202ENST00000361309 TOP2BQ02880 1626 aa37.95■■■■□ 3.67
CD47-202ENST00000361309 ADAMTS12P58397 1594 aa37.93■■■■□ 3.66
CD47-202ENST00000361309 ERCC6L2Q5T890 1561 aa37.86■■■■□ 3.65
CD47-202ENST00000361309 CEP170Q5SW79 1584 aa37.85■■■■□ 3.65
CD47-202ENST00000361309 NUP160Q12769 1436 aa37.82■■■■□ 3.64
CD47-202ENST00000361309 FHAD1B1AJZ9 1412 aa37.78■■■■□ 3.64
CD47-202ENST00000361309 ERICH3Q5RHP9 1530 aa37.73■■■■□ 3.63
CD47-202ENST00000361309 SHROOM2Q13796 1616 aa37.72■■■■□ 3.63
CD47-202ENST00000361309 PRG4Q92954 1404 aaPredicted RBP37.49■■■■□ 3.59
CD47-202ENST00000361309 JPH4Q96JJ6 628 aa37.44■■■■□ 3.58
CD47-202ENST00000361309 AEBP2Q6ZN18 517 aaPredicted RBP37.4■■■■□ 3.58
CD47-202ENST00000361309 RUSC2Q8N2Y8 1516 aa37.4■■■■□ 3.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms