Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC31■■■□□ 2.55
COL5A3P25940 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
COL5A3P25940 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
COL5A3P25940 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.99■■■□□ 2.55
COL5A3P25940 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.99■■■□□ 2.55
COL5A3P25940 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL5A3P25940 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.99■■■□□ 2.55
COL5A3P25940 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
COL5A3P25940 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.99■■■□□ 2.55
COL5A3P25940 AC021242.3-201ENST00000607598 1377 ntBASIC30.99■■■□□ 2.55
COL5A3P25940 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.98■■■□□ 2.55
COL5A3P25940 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.98■■■□□ 2.55
COL5A3P25940 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL5A3P25940 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
COL5A3P25940 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC30.98■■■□□ 2.55
COL5A3P25940 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL5A3P25940 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL5A3P25940 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC30.97■■■□□ 2.55
COL5A3P25940 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL5A3P25940 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL5A3P25940 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL5A3P25940 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL5A3P25940 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
COL5A3P25940 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
COL5A3P25940 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.95■■■□□ 2.55
COL5A3P25940 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC30.95■■■□□ 2.55
COL5A3P25940 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.95■■■□□ 2.55
COL5A3P25940 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.95■■■□□ 2.55
COL5A3P25940 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL5A3P25940 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
COL5A3P25940 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.94■■■□□ 2.54
COL5A3P25940 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL5A3P25940 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.93■■■□□ 2.54
COL5A3P25940 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL5A3P25940 MIR935-201ENST00000401179 91 ntBASIC30.93■■■□□ 2.54
COL5A3P25940 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.93■■■□□ 2.54
COL5A3P25940 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.93■■■□□ 2.54
COL5A3P25940 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL5A3P25940 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC30.92■■■□□ 2.54
COL5A3P25940 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
COL5A3P25940 LINC01003-201ENST00000564834 1764 ntBASIC30.92■■■□□ 2.54
COL5A3P25940 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL5A3P25940 AC120024.1-201ENST00000562672 995 ntBASIC30.91■■■□□ 2.54
COL5A3P25940 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL5A3P25940 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.9■■■□□ 2.54
COL5A3P25940 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL5A3P25940 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL5A3P25940 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL5A3P25940 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL5A3P25940 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL5A3P25940 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL5A3P25940 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
COL5A3P25940 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC30.89■■■□□ 2.54
COL5A3P25940 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC30.89■■■□□ 2.54
COL5A3P25940 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
COL5A3P25940 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
COL5A3P25940 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
COL5A3P25940 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC30.88■■■□□ 2.53
COL5A3P25940 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.88■■■□□ 2.53
COL5A3P25940 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.88■■■□□ 2.53
COL5A3P25940 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.88■■■□□ 2.53
COL5A3P25940 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC30.87■■■□□ 2.53
COL5A3P25940 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.87■■■□□ 2.53
COL5A3P25940 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.87■■■□□ 2.53
COL5A3P25940 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.87■■■□□ 2.53
COL5A3P25940 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC30.87■■■□□ 2.53
COL5A3P25940 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL5A3P25940 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL5A3P25940 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.86■■■□□ 2.53
COL5A3P25940 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
COL5A3P25940 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL5A3P25940 AC142472.1-201ENST00000612013 1741 ntBASIC30.85■■■□□ 2.53
COL5A3P25940 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL5A3P25940 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL5A3P25940 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL5A3P25940 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.84■■■□□ 2.53
COL5A3P25940 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL5A3P25940 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL5A3P25940 AL117332.1-201ENST00000622628 974 ntBASIC30.84■■■□□ 2.53
COL5A3P25940 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.84■■■□□ 2.53
COL5A3P25940 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL5A3P25940 TSPY9P-201ENST00000440215 945 ntBASIC30.83■■■□□ 2.53
COL5A3P25940 TSPY11P-201ENST00000442607 1045 ntBASIC30.83■■■□□ 2.53
COL5A3P25940 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.83■■■□□ 2.53
COL5A3P25940 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.83■■■□□ 2.53
COL5A3P25940 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL5A3P25940 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL5A3P25940 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL5A3P25940 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.81■■■□□ 2.52
COL5A3P25940 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL5A3P25940 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
COL5A3P25940 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
COL5A3P25940 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL5A3P25940 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC30.81■■■□□ 2.52
COL5A3P25940 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.81■■■□□ 2.52
COL5A3P25940 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
COL5A3P25940 AC092028.1-203ENST00000608262 953 ntBASIC30.81■■■□□ 2.52
COL5A3P25940 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.81■■■□□ 2.52
COL5A3P25940 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL5A3P25940 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms