Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC23.13■■□□□ 1.29
LSM1O15116 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
LSM1O15116 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LSM1O15116 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
LSM1O15116 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
LSM1O15116 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
LSM1O15116 AC138932.3-201ENST00000567634 1902 ntBASIC23.12■■□□□ 1.29
LSM1O15116 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC23.11■■□□□ 1.29
LSM1O15116 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LSM1O15116 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LSM1O15116 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC23.11■■□□□ 1.29
LSM1O15116 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
LSM1O15116 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LSM1O15116 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
LSM1O15116 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
LSM1O15116 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LSM1O15116 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.1■■□□□ 1.29
LSM1O15116 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
LSM1O15116 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LSM1O15116 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
LSM1O15116 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
LSM1O15116 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.09■■□□□ 1.29
LSM1O15116 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LSM1O15116 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LSM1O15116 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LSM1O15116 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LSM1O15116 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LSM1O15116 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.08■■□□□ 1.29
LSM1O15116 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC23.08■■□□□ 1.29
LSM1O15116 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC23.08■■□□□ 1.29
LSM1O15116 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LSM1O15116 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
LSM1O15116 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
LSM1O15116 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
LSM1O15116 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.08■■□□□ 1.28
LSM1O15116 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
LSM1O15116 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.07■■□□□ 1.28
LSM1O15116 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LSM1O15116 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LSM1O15116 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
LSM1O15116 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
LSM1O15116 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LSM1O15116 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.06■■□□□ 1.28
LSM1O15116 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LSM1O15116 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.06■■□□□ 1.28
LSM1O15116 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
LSM1O15116 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LSM1O15116 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LSM1O15116 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.05■■□□□ 1.28
LSM1O15116 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LSM1O15116 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LSM1O15116 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
LSM1O15116 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LSM1O15116 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC23.04■■□□□ 1.28
LSM1O15116 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC23.04■■□□□ 1.28
LSM1O15116 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
LSM1O15116 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
LSM1O15116 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 AL157400.5-201ENST00000507624 621 ntBASIC23.03■■□□□ 1.28
LSM1O15116 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
LSM1O15116 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.02■■□□□ 1.28
LSM1O15116 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LSM1O15116 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LSM1O15116 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
LSM1O15116 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LSM1O15116 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LSM1O15116 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
LSM1O15116 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LSM1O15116 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LSM1O15116 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
LSM1O15116 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LSM1O15116 AC097639.1-201ENST00000565519 1891 ntBASIC23.01■■□□□ 1.27
LSM1O15116 AL139125.2-201ENST00000623134 1869 ntBASIC23.01■■□□□ 1.27
LSM1O15116 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.01■■□□□ 1.27
LSM1O15116 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
LSM1O15116 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23■■□□□ 1.27
LSM1O15116 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
LSM1O15116 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23■■□□□ 1.27
LSM1O15116 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
LSM1O15116 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
LSM1O15116 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms