RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 NISCHQ9Y2I1 1504 aa58.28■■■■■ 6.92
HOXC9-201ENST00000303450 CCDC180Q9P1Z9 1646 aa51.53■■■■■ 5.84
HOXC9-201ENST00000303450 ABCC9O60706 1549 aa49.92■■■■■ 5.58
HOXC9-201ENST00000303450 ZCCHC6Q5VYS8 1495 aaKnown RBP48.65■■■■■ 5.38
HOXC9-201ENST00000303450 DCAF8L2P0C7V8 631 aa48.58■■■■■ 5.37
HOXC9-201ENST00000303450 NACADO15069 1562 aa48.33■■■■■ 5.33
HOXC9-201ENST00000303450 RB1CC1Q8TDY2 1594 aa48.26■■■■■ 5.32
HOXC9-201ENST00000303450 DCAF1Q9Y4B6 1507 aa48.22■■■■■ 5.31
HOXC9-201ENST00000303450 MYO15BQ96JP2 1530 aa48.2■■■■■ 5.31
HOXC9-201ENST00000303450 UNC13AQ9UPW8 1703 aa47.16■■■■■ 5.14
HOXC9-201ENST00000303450 SCRIBQ14160 1630 aa47.12■■■■■ 5.13
HOXC9-201ENST00000303450 PABPN1Q86U42 306 aaKnown RBP eCLIP46.78■■■■■ 5.08
HOXC9-201ENST00000303450 BICRAQ9NZM4 1560 aa46.74■■■■■ 5.07
HOXC9-201ENST00000303450 SHROOM4Q9ULL8 1493 aa46.46■■■■■ 5.03
HOXC9-201ENST00000303450 EIF4G1Q04637 1599 aaKnown RBP45.49■■■■■ 4.87
HOXC9-201ENST00000303450 CECR2Q9BXF3 1484 aa45.34■■■■■ 4.85
HOXC9-201ENST00000303450 DNAJC5BQ9UF47 199 aa45.28■■■■■ 4.84
HOXC9-201ENST00000303450 CC2D2AQ9P2K1 1620 aa45.16■■■■■ 4.82
HOXC9-201ENST00000303450 BAZ1AQ9NRL2 1556 aaPredicted RBP45.14■■■■■ 4.82
HOXC9-201ENST00000303450 SMARCA4P51532 1647 aa45.1■■■■■ 4.81
HOXC9-201ENST00000303450 MROH2BQ7Z745 1585 aa44.93■■■■■ 4.78
HOXC9-201ENST00000303450 ATAD2BQ9ULI0 1458 aa44.71■■■■■ 4.75
HOXC9-201ENST00000303450 SMARCA2P51531 1590 aa44.69■■■■■ 4.74
HOXC9-201ENST00000303450 RSF1Q96T23 1441 aaPredicted RBP44.63■■■■■ 4.73
HOXC9-201ENST00000303450 PEG3Q9GZU2 1588 aa44.62■■■■■ 4.73
HOXC9-201ENST00000303450 NCAPD3P42695 1498 aa44.58■■■■■ 4.73
HOXC9-201ENST00000303450 WIZO95785 1651 aa44.48■■■■■ 4.71
HOXC9-201ENST00000303450 HMGXB3Q12766 1538 aa44.41■■■■■ 4.7
HOXC9-201ENST00000303450 BAZ1BQ9UIG0 1483 aaKnown RBP44.4■■■■■ 4.7
HOXC9-201ENST00000303450 SUPT5HO00267 1087 aaKnown RBP44.04■■■■■ 4.64
HOXC9-201ENST00000303450 TOP2AP11388 1531 aaKnown RBP44.03■■■■■ 4.64
HOXC9-201ENST00000303450 CCDC88BA6NC98 1476 aa43.53■■■■■ 4.56
HOXC9-201ENST00000303450 NESP48681 1621 aa43.36■■■■■ 4.53
HOXC9-201ENST00000303450 CADPSQ9ULU8 1353 aa43.34■■■■■ 4.53
HOXC9-201ENST00000303450 LAMC3Q9Y6N6 1575 aa43.32■■■■■ 4.53
HOXC9-201ENST00000303450 CFTRP13569 1480 aa43.19■■■■■ 4.5
HOXC9-201ENST00000303450 PDS5BQ9NTI5 1447 aa43.05■■■■■ 4.48
HOXC9-201ENST00000303450 ERCC6Q03468 1493 aa43.02■■■■■ 4.48
HOXC9-201ENST00000303450 PRDM2Q13029 1718 aa42.91■■■■■ 4.46
HOXC9-201ENST00000303450 KIF21AQ7Z4S6 1674 aa42.86■■■■■ 4.45
HOXC9-201ENST00000303450 FANCD2Q9BXW9 1451 aa42.85■■■■■ 4.45
HOXC9-201ENST00000303450 CEP164Q9UPV0 1460 aa42.74■■■■■ 4.43
HOXC9-201ENST00000303450 MRC2Q9UBG0 1479 aa42.55■■■■■ 4.4
HOXC9-201ENST00000303450 THOC2Q8NI27 1593 aaKnown RBP42.54■■■■■ 4.4
HOXC9-201ENST00000303450 WDR62O43379 1518 aa42.37■■■■■ 4.37
HOXC9-201ENST00000303450 URB2Q14146 1524 aaKnown RBP42.37■■■■■ 4.37
HOXC9-201ENST00000303450 CUX2O14529 1486 aa42.29■■■■■ 4.36
HOXC9-201ENST00000303450 ABCC8Q09428 1581 aa42.25■■■■■ 4.35
HOXC9-201ENST00000303450 TOPBP1Q92547 1522 aa42.22■■■■■ 4.35
HOXC9-201ENST00000303450 DNMBPQ6XZF7 1577 aa42.22■■■■■ 4.35
HOXC9-201ENST00000303450 CUX1P39880 1505 aa42.11■■■■■ 4.33
HOXC9-201ENST00000303450 WRNQ14191 1432 aaPredicted RBP eCLIP42.09■■■■■ 4.33
HOXC9-201ENST00000303450 SYNJ1O43426 1573 aa41.93■■■■■ 4.3
HOXC9-201ENST00000303450 TOP2BQ02880 1626 aa41.91■■■■■ 4.3
HOXC9-201ENST00000303450 POLA1P09884 1462 aaPredicted RBP41.9■■■■■ 4.3
HOXC9-201ENST00000303450 FGD5Q6ZNL6 1462 aa41.9■■■■■ 4.3
HOXC9-201ENST00000303450 BIVM-ERCC5R4GMW8 1640 aa41.89■■■■■ 4.3
HOXC9-201ENST00000303450 IFT140Q96RY7 1462 aa41.82■■■■■ 4.28
HOXC9-201ENST00000303450 SOGA1O94964 1423 aa41.76■■■■■ 4.28
HOXC9-201ENST00000303450 RAD54L2Q9Y4B4 1467 aa41.73■■■■■ 4.27
HOXC9-201ENST00000303450 TARBP1Q13395 1621 aaKnown RBP41.69■■■■■ 4.26
HOXC9-201ENST00000303450 ZNF608Q9ULD9 1512 aaPredicted RBP41.58■■■■■ 4.25
HOXC9-201ENST00000303450 TRIM41Q8WV44 630 aa41.55■■■■■ 4.24
HOXC9-201ENST00000303450 ABCA10Q8WWZ4 1543 aa41.5■■■■■ 4.23
HOXC9-201ENST00000303450 WDR97A6NE52 1622 aa41.48■■■■■ 4.23
HOXC9-201ENST00000303450 TDRD9Q8NDG6 1382 aaKnown RBP41.47■■■■■ 4.23
HOXC9-201ENST00000303450 AQRO60306 1485 aaKnown RBP eCLIP41.44■■■■■ 4.22
HOXC9-201ENST00000303450 EIF4G3O43432 1585 aaKnown RBP41.43■■■■■ 4.22
HOXC9-201ENST00000303450 CHIC1Q5VXU3 224 aa41.39■■■■■ 4.22
HOXC9-201ENST00000303450 GAPVD1Q14C86 1478 aa41.29■■■■■ 4.2
HOXC9-201ENST00000303450 ABCA5Q8WWZ7 1642 aa41.27■■■■■ 4.2
HOXC9-201ENST00000303450 GRIN2BQ13224 1484 aa41.19■■■■■ 4.19
HOXC9-201ENST00000303450 KIF27Q86VH2 1401 aa41.17■■■■■ 4.18
HOXC9-201ENST00000303450 PBRM1Q86U86 1689 aa41.14■■■■■ 4.18
HOXC9-201ENST00000303450 SNAPC4Q5SXM2 1469 aa41.06■■■■■ 4.16
HOXC9-201ENST00000303450 MAGI1Q96QZ7 1491 aaPredicted RBP41.02■■■■■ 4.16
HOXC9-201ENST00000303450 ERICH3Q5RHP9 1530 aa41.02■■■■■ 4.16
HOXC9-201ENST00000303450 RUSC2Q8N2Y8 1516 aa40.95■■■■■ 4.15
HOXC9-201ENST00000303450 IGF1RP08069 1367 aa40.91■■■■■ 4.14
HOXC9-201ENST00000303450 FBLN2P98095 1184 aa40.9■■■■■ 4.14
HOXC9-201ENST00000303450 CHMP7Q8WUX9 453 aaPredicted RBP40.86■■■■■ 4.13
HOXC9-201ENST00000303450 SYNJ2O15056 1496 aa40.85■■■■■ 4.13
HOXC9-201ENST00000303450 ADAMTS12P58397 1594 aa40.85■■■■■ 4.13
HOXC9-201ENST00000303450 FHAD1B1AJZ9 1412 aa40.82■■■■■ 4.13
HOXC9-201ENST00000303450 CHD1O14646 1710 aa40.81■■■■■ 4.12
HOXC9-201ENST00000303450 CUL7Q14999 1698 aa40.77■■■■■ 4.12
HOXC9-201ENST00000303450 EEA1Q15075 1411 aa40.76■■■■■ 4.12
HOXC9-201ENST00000303450 OSCARQ8IYS5 282 aa40.71■■■■■ 4.11
HOXC9-201ENST00000303450 CARMIL1Q5VZK9 1371 aa40.7■■■■■ 4.11
HOXC9-201ENST00000303450 FAM9AQ8IZU1 332 aaPredicted RBP40.7■■■■■ 4.11
HOXC9-201ENST00000303450 GRIN2AQ12879 1464 aa40.66■■■■■ 4.1
HOXC9-201ENST00000303450 CSRNP3Q8WYN3 585 aa40.65■■■■■ 4.1
HOXC9-201ENST00000303450 RAPGEF2Q9Y4G8 1499 aa40.51■■■■■ 4.08
HOXC9-201ENST00000303450 PRXQ9BXM0 1461 aa40.49■■■■■ 4.07
HOXC9-201ENST00000303450 NUP160Q12769 1436 aa40.43■■■■■ 4.06
HOXC9-201ENST00000303450 CEP170Q5SW79 1584 aa40.42■■■■■ 4.06
HOXC9-201ENST00000303450 CLASP1Q7Z460 1538 aa40.35■■■■■ 4.05
HOXC9-201ENST00000303450 DNAJC5Q9H3Z4 198 aa40.34■■■■■ 4.05
HOXC9-201ENST00000303450 KIF21BO75037 1637 aa40.27■■■■■ 4.04
HOXC9-201ENST00000303450 KIAA0586Q9BVV6 1533 aa40.21■■■■■ 4.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms