Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PHB2-202ENST00000440277 996 ntTSL 5 BASIC25.54■■□□□ 1.681e-323■□□□□ 8.8
UPF1Q92900 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC25.52■■□□□ 1.681e-323■□□□□ 8.8
UPF1Q92900 PHB2-205ENST00000537646 874 ntTSL 523.12■■□□□ 1.291e-323■□□□□ 8.8
UPF1Q92900 SCARNA12-201ENST00000459155 270 ntBASIC19.6■□□□□ 0.731e-323■□□□□ 8.8
UPF1Q92900 PHB2-212ENST00000545555 309 ntTSL 512.67□□□□□ -0.381e-323■□□□□ 8.8
UPF1Q92900 ALDH3A2-222ENST00000582991 2152 ntTSL 518.76■□□□□ 0.593e-6■□□□□ 8.8
UPF1Q92900 SDHD-202ENST00000525291 790 ntTSL 3 BASIC21.1■□□□□ 0.972e-6■□□□□ 8.8
UPF1Q92900 SDHD-205ENST00000528048 905 ntTSL 1 (best) BASIC16.75■□□□□ 0.272e-6■□□□□ 8.8
UPF1Q92900 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.011e-9■□□□□ 8.8
UPF1Q92900 DMBX1-202ENST00000371956 2882 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.531e-9■□□□□ 8.8
UPF1Q92900 SLC20A2-201ENST00000342228 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.49e-6■□□□□ 8.8
UPF1Q92900 BNIP3L-207ENST00000523949 875 ntTSL 314.71□□□□□ -0.052e-13■□□□□ 8.8
UPF1Q92900 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.372e-13■□□□□ 8.8
UPF1Q92900 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.296e-9■□□□□ 8.8
UPF1Q92900 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.156e-9■□□□□ 8.8
UPF1Q92900 NR2F2-AS1-202ENST00000557863 515 ntTSL 321.76■■□□□ 1.076e-9■□□□□ 8.8
UPF1Q92900 NR2F2-AS1-210ENST00000561344 966 ntTSL 1 (best) BASIC17.73■□□□□ 0.436e-9■□□□□ 8.8
UPF1Q92900 NR2F2-AS1-203ENST00000558929 574 ntTSL 5 BASIC15.13■□□□□ 0.016e-9■□□□□ 8.8
UPF1Q92900 NR2F2-AS1-201ENST00000502125 1930 ntTSL 2 BASIC14.09□□□□□ -0.156e-9■□□□□ 8.8
UPF1Q92900 ORMDL1-207ENST00000496543 723 ntTSL 311.75□□□□□ -0.536e-9■□□□□ 8.8
UPF1Q92900 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC10.86□□□□□ -0.676e-9■□□□□ 8.8
UPF1Q92900 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC8.7□□□□□ -1.026e-9■□□□□ 8.8
UPF1Q92900 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC7.28□□□□□ -1.246e-9■□□□□ 8.8
UPF1Q92900 TMOD3-211ENST00000561438 1139 ntTSL 511.09□□□□□ -0.632e-8■□□□□ 8.8
UPF1Q92900 TMOD3-201ENST00000308580 8255 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.822e-8■□□□□ 8.8
UPF1Q92900 TMOD3-207ENST00000560549 1474 ntTSL 1 (best)9.81□□□□□ -0.842e-8■□□□□ 8.8
UPF1Q92900 SLC35C2-209ENST00000484188 854 ntTSL 530.69■■■□□ 2.53e-7■□□□□ 8.8
UPF1Q92900 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.58■■□□□ 1.378e-8■□□□□ 8.8
UPF1Q92900 SLC35C2-208ENST00000481809 872 ntTSL 521.48■■□□□ 1.033e-7■□□□□ 8.8
UPF1Q92900 SLC35C2-210ENST00000484318 971 ntTSL 521.33■■□□□ 1.013e-7■□□□□ 8.8
UPF1Q92900 SLC35C2-206ENST00000424568 731 ntTSL 221.2■□□□□ 0.983e-7■□□□□ 8.8
UPF1Q92900 SLC35C2-205ENST00000420518 588 ntTSL 320.84■□□□□ 0.933e-7■□□□□ 8.8
UPF1Q92900 RAN-210ENST00000541630 1475 ntTSL 2 BASIC19.52■□□□□ 0.723e-7■□□□□ 8.8
UPF1Q92900 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.248e-8■□□□□ 8.8
UPF1Q92900 KHNYN-203ENST00000554268 760 ntTSL 3 BASIC14.07□□□□□ -0.168e-8■□□□□ 8.8
UPF1Q92900 NOTUM-203ENST00000477214 813 ntTSL 534.82■■■■□ 3.169e-8■□□□□ 8.7
UPF1Q92900 NOTUM-202ENST00000425009 996 ntTSL 334.78■■■■□ 3.169e-8■□□□□ 8.7
UPF1Q92900 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.04■■■□□ 2.45e-6■□□□□ 8.7
UPF1Q92900 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.955e-6■□□□□ 8.7
UPF1Q92900 ERBB2-211ENST00000582648 1013 ntTSL 525.08■■□□□ 1.615e-6■□□□□ 8.7
UPF1Q92900 ERBB2-222ENST00000584908 1316 ntTSL 1 (best)22.47■■□□□ 1.195e-6■□□□□ 8.7
UPF1Q92900 ERBB2-212ENST00000582788 2004 ntTSL 520.47■□□□□ 0.875e-6■□□□□ 8.7
UPF1Q92900 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.23■□□□□ 0.515e-6■□□□□ 8.7
UPF1Q92900 SLC9A3R1-204ENST00000581356 519 ntTSL 317.96■□□□□ 0.473e-12■□□□□ 8.7
UPF1Q92900 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.325e-6■□□□□ 8.7
UPF1Q92900 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.53■□□□□ 0.245e-6■□□□□ 8.7
UPF1Q92900 ELMO2-201ENST00000290246 3669 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.075e-6■□□□□ 8.7
UPF1Q92900 GPC3-201ENST00000370818 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.185e-6■□□□□ 8.7
UPF1Q92900 ELMO2-204ENST00000396391 3574 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.215e-6■□□□□ 8.7
UPF1Q92900 ELMO2-207ENST00000452857 2158 ntTSL 513.62□□□□□ -0.235e-6■□□□□ 8.7
UPF1Q92900 AC104452.1-204ENST00000637442 4178 ntTSL 513.29□□□□□ -0.285e-6■□□□□ 8.7
UPF1Q92900 C1orf226-203ENST00000458626 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.535e-6■□□□□ 8.7
UPF1Q92900 ELMO2-212ENST00000467800 4121 ntTSL 1 (best)8.74□□□□□ -1.015e-6■□□□□ 8.7
UPF1Q92900 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC8.51□□□□□ -1.055e-6■□□□□ 8.7
UPF1Q92900 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.575e-6■□□□□ 8.7
UPF1Q92900 SLC25A39-206ENST00000585695 1121 ntTSL 232.3■■■□□ 2.763e-6■□□□□ 8.7
UPF1Q92900 SCYL1-209ENST00000528545 981 ntTSL 528.99■■■□□ 2.233e-6■□□□□ 8.7
UPF1Q92900 SCYL1-213ENST00000532290 856 nt28.99■■■□□ 2.233e-6■□□□□ 8.7
UPF1Q92900 SLC25A39-210ENST00000588315 1409 ntTSL 228.14■■■□□ 2.13e-6■□□□□ 8.7
UPF1Q92900 SCYL1-215ENST00000534462 579 ntTSL 325.85■■□□□ 1.733e-6■□□□□ 8.7
UPF1Q92900 TANGO2-226ENST00000490583 888 ntTSL 324.95■■□□□ 1.583e-7■□□□□ 8.7
UPF1Q92900 RPL10A-204ENST00000478340 962 ntTSL 224.33■■□□□ 1.495e-18■□□□□ 8.7
UPF1Q92900 SLC25A39-211ENST00000588767 807 ntTSL 522.44■■□□□ 1.183e-6■□□□□ 8.7
UPF1Q92900 MMS19-212ENST00000444411 640 ntTSL 222.08■■□□□ 1.133e-6■□□□□ 8.7
UPF1Q92900 TANGO2-221ENST00000476940 414 ntTSL 521.58■■□□□ 1.053e-7■□□□□ 8.7
UPF1Q92900 CDC42SE1-203ENST00000470278 939 ntTSL 521.2■□□□□ 0.983e-7■□□□□ 8.7
UPF1Q92900 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.99■□□□□ 0.953e-6■□□□□ 8.7
UPF1Q92900 RPL10A-205ENST00000490335 632 ntTSL 220.45■□□□□ 0.865e-18■□□□□ 8.7
UPF1Q92900 TANGO2-213ENST00000444651 847 ntTSL 320.29■□□□□ 0.843e-7■□□□□ 8.7
UPF1Q92900 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.98■□□□□ 0.791e-8■□□□□ 8.7
UPF1Q92900 RPL10A-203ENST00000467020 1069 ntTSL 319.77■□□□□ 0.765e-18■□□□□ 8.7
UPF1Q92900 MMS19-218ENST00000485400 1513 ntTSL 219.76■□□□□ 0.753e-6■□□□□ 8.7
UPF1Q92900 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.16■□□□□ 0.663e-6■□□□□ 8.7
UPF1Q92900 RPL10A-202ENST00000464112 1063 ntTSL 1 (best)18.91■□□□□ 0.625e-18■□□□□ 8.7
UPF1Q92900 SLC20A1-204ENST00000433924 638 ntTSL 418.15■□□□□ 0.53e-6■□□□□ 8.7
UPF1Q92900 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.43■□□□□ 0.383e-6■□□□□ 8.7
UPF1Q92900 HYOU1-208ENST00000531682 319 ntTSL 217.28■□□□□ 0.368e-10■□□□□ 8.7
UPF1Q92900 MMS19-219ENST00000495415 1879 ntTSL 517.1■□□□□ 0.333e-6■□□□□ 8.7
UPF1Q92900 RPL10A-201ENST00000322203 716 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.35e-18■□□□□ 8.7
UPF1Q92900 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.72■□□□□ 0.273e-6■□□□□ 8.7
UPF1Q92900 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.09■□□□□ 0.173e-6■□□□□ 8.7
UPF1Q92900 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.13e-6■□□□□ 8.7
UPF1Q92900 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC15.02■□□□□ -03e-6■□□□□ 8.7
UPF1Q92900 CDC42SE1-206ENST00000492796 1174 ntTSL 214.71□□□□□ -0.053e-7■□□□□ 8.7
UPF1Q92900 NUP98-209ENST00000469881 687 ntTSL 214.66□□□□□ -0.063e-6■□□□□ 8.7
UPF1Q92900 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.083e-7■□□□□ 8.7
UPF1Q92900 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.17□□□□□ -0.143e-6■□□□□ 8.7
UPF1Q92900 BTG1-201ENST00000256015 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.253e-6■□□□□ 8.7
UPF1Q92900 MMS19-209ENST00000438925 3797 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.323e-6■□□□□ 8.7
UPF1Q92900 MMS19-201ENST00000327238 3165 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.343e-6■□□□□ 8.7
UPF1Q92900 RBM23-202ENST00000346528 2361 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.423e-6■□□□□ 8.7
UPF1Q92900 SLC20A1-209ENST00000498224 692 ntTSL 212.4□□□□□ -0.423e-6■□□□□ 8.7
UPF1Q92900 MMS19-204ENST00000415383 3401 ntTSL 1 (best)12.16□□□□□ -0.463e-6■□□□□ 8.7
UPF1Q92900 MMS19-203ENST00000370782 3532 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.473e-6■□□□□ 8.7
UPF1Q92900 RBM23-215ENST00000555209 2278 ntTSL 1 (best) BASIC12.02□□□□□ -0.493e-6■□□□□ 8.7
UPF1Q92900 SLC20A1-205ENST00000456264 574 ntTSL 411.99□□□□□ -0.493e-6■□□□□ 8.7
UPF1Q92900 MMS19-207ENST00000434538 2164 ntTSL 211.82□□□□□ -0.523e-6■□□□□ 8.7
UPF1Q92900 XPC-201ENST00000285021 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.63e-6■□□□□ 8.7
UPF1Q92900 C5orf22-201ENST00000325366 3612 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.623e-7■□□□□ 8.7
UPF1Q92900 SLC20A1-206ENST00000480984 738 ntTSL 511□□□□□ -0.653e-6■□□□□ 8.7
Retrieved 100 of 15,879 protein–RNA pairs in 54.6 ms