RNA–Protein interactions for RNA: ENST00000492796.5

CDC42SE1-206, Transcript of CDC42 small effector 1, humanhuman

TSL 2

Gene CDC42SE1, Length 1,174 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-206ENST00000492796 NISCHQ9Y2I1 1504 aa26.02■■□□□ 1.76
CDC42SE1-206ENST00000492796 CCDC180Q9P1Z9 1646 aa23.23■■□□□ 1.31
CDC42SE1-206ENST00000492796 ABCC9O60706 1549 aa22.62■■□□□ 1.21
CDC42SE1-206ENST00000492796 RB1CC1Q8TDY2 1594 aa21.83■■□□□ 1.09
CDC42SE1-206ENST00000492796 NACADO15069 1562 aa21.8■■□□□ 1.08
CDC42SE1-206ENST00000492796 ZCCHC6Q5VYS8 1495 aaKnown RBP21.69■■□□□ 1.06
CDC42SE1-206ENST00000492796 MYO15BQ96JP2 1530 aa21.69■■□□□ 1.06
CDC42SE1-206ENST00000492796 DCAF8L2P0C7V8 631 aa21.61■■□□□ 1.05
CDC42SE1-206ENST00000492796 DCAF1Q9Y4B6 1507 aa21.58■■□□□ 1.04
CDC42SE1-206ENST00000492796 UNC13AQ9UPW8 1703 aa21.34■■□□□ 1.01
CDC42SE1-206ENST00000492796 BICRAQ9NZM4 1560 aa21.14■□□□□ 0.97
CDC42SE1-206ENST00000492796 SCRIBQ14160 1630 aa21.11■□□□□ 0.97
CDC42SE1-206ENST00000492796 PABPN1Q86U42 306 aaKnown RBP eCLIP21.07■□□□□ 0.96
CDC42SE1-206ENST00000492796 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
CDC42SE1-206ENST00000492796 DNAJC5BQ9UF47 199 aa20.92■□□□□ 0.94
CDC42SE1-206ENST00000492796 EIF4G1Q04637 1599 aaKnown RBP20.6■□□□□ 0.89
CDC42SE1-206ENST00000492796 CC2D2AQ9P2K1 1620 aa20.51■□□□□ 0.87
CDC42SE1-206ENST00000492796 CECR2Q9BXF3 1484 aa20.36■□□□□ 0.85
CDC42SE1-206ENST00000492796 SMARCA4P51532 1647 aa20.22■□□□□ 0.83
CDC42SE1-206ENST00000492796 BAZ1AQ9NRL2 1556 aaPredicted RBP20.2■□□□□ 0.82
CDC42SE1-206ENST00000492796 SMARCA2P51531 1590 aa20.1■□□□□ 0.81
CDC42SE1-206ENST00000492796 NCAPD3P42695 1498 aa20.08■□□□□ 0.81
CDC42SE1-206ENST00000492796 ATAD2BQ9ULI0 1458 aa20.07■□□□□ 0.8
CDC42SE1-206ENST00000492796 PEG3Q9GZU2 1588 aa20.05■□□□□ 0.8
CDC42SE1-206ENST00000492796 HMGXB3Q12766 1538 aa20.03■□□□□ 0.8
CDC42SE1-206ENST00000492796 MROH2BQ7Z745 1585 aa20.02■□□□□ 0.8
CDC42SE1-206ENST00000492796 BAZ1BQ9UIG0 1483 aaKnown RBP19.92■□□□□ 0.78
CDC42SE1-206ENST00000492796 WIZO95785 1651 aa19.83■□□□□ 0.76
CDC42SE1-206ENST00000492796 RSF1Q96T23 1441 aaPredicted RBP19.77■□□□□ 0.76
CDC42SE1-206ENST00000492796 TOP2AP11388 1531 aaKnown RBP19.65■□□□□ 0.74
CDC42SE1-206ENST00000492796 DNAJC5Q9H3Z4 198 aa19.6■□□□□ 0.73
CDC42SE1-206ENST00000492796 LAMC3Q9Y6N6 1575 aa19.6■□□□□ 0.73
CDC42SE1-206ENST00000492796 NESP48681 1621 aa19.56■□□□□ 0.72
CDC42SE1-206ENST00000492796 ERCC6Q03468 1493 aa19.53■□□□□ 0.72
CDC42SE1-206ENST00000492796 CADPSQ9ULU8 1353 aa19.47■□□□□ 0.71
CDC42SE1-206ENST00000492796 PDS5BQ9NTI5 1447 aa19.42■□□□□ 0.7
CDC42SE1-206ENST00000492796 KIF21AQ7Z4S6 1674 aa19.4■□□□□ 0.7
CDC42SE1-206ENST00000492796 CUX2O14529 1486 aa19.38■□□□□ 0.69
CDC42SE1-206ENST00000492796 CFTRP13569 1480 aa19.38■□□□□ 0.69
CDC42SE1-206ENST00000492796 THOC2Q8NI27 1593 aaKnown RBP19.36■□□□□ 0.69
CDC42SE1-206ENST00000492796 CCDC88BA6NC98 1476 aa19.35■□□□□ 0.69
CDC42SE1-206ENST00000492796 PRDM2Q13029 1718 aa19.32■□□□□ 0.68
CDC42SE1-206ENST00000492796 FANCD2Q9BXW9 1451 aa19.26■□□□□ 0.67
CDC42SE1-206ENST00000492796 CEP164Q9UPV0 1460 aa19.26■□□□□ 0.67
CDC42SE1-206ENST00000492796 MRC2Q9UBG0 1479 aa19.24■□□□□ 0.67
CDC42SE1-206ENST00000492796 WDR62O43379 1518 aa19.2■□□□□ 0.66
CDC42SE1-206ENST00000492796 SUPT5HO00267 1087 aaKnown RBP19.17■□□□□ 0.66
CDC42SE1-206ENST00000492796 URB2Q14146 1524 aaKnown RBP19.06■□□□□ 0.64
CDC42SE1-206ENST00000492796 ABCC8Q09428 1581 aa18.99■□□□□ 0.63
CDC42SE1-206ENST00000492796 DNMBPQ6XZF7 1577 aa18.97■□□□□ 0.63
CDC42SE1-206ENST00000492796 TOPBP1Q92547 1522 aa18.95■□□□□ 0.62
CDC42SE1-206ENST00000492796 IFT140Q96RY7 1462 aa18.86■□□□□ 0.61
CDC42SE1-206ENST00000492796 POLA1P09884 1462 aaPredicted RBP18.8■□□□□ 0.6
CDC42SE1-206ENST00000492796 CUX1P39880 1505 aa18.79■□□□□ 0.6
CDC42SE1-206ENST00000492796 TARBP1Q13395 1621 aaKnown RBP18.78■□□□□ 0.6
CDC42SE1-206ENST00000492796 FGD5Q6ZNL6 1462 aa18.75■□□□□ 0.59
CDC42SE1-206ENST00000492796 ZNF608Q9ULD9 1512 aaPredicted RBP18.73■□□□□ 0.59
CDC42SE1-206ENST00000492796 EIF4G3O43432 1585 aaKnown RBP18.72■□□□□ 0.59
CDC42SE1-206ENST00000492796 WDR97A6NE52 1622 aa18.7■□□□□ 0.58
CDC42SE1-206ENST00000492796 SOGA1O94964 1423 aa18.68■□□□□ 0.58
CDC42SE1-206ENST00000492796 BIVM-ERCC5R4GMW8 1640 aa18.68■□□□□ 0.58
CDC42SE1-206ENST00000492796 TOP2BQ02880 1626 aa18.67■□□□□ 0.58
CDC42SE1-206ENST00000492796 RAD54L2Q9Y4B4 1467 aa18.67■□□□□ 0.58
CDC42SE1-206ENST00000492796 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
CDC42SE1-206ENST00000492796 SYNJ1O43426 1573 aa18.64■□□□□ 0.57
CDC42SE1-206ENST00000492796 AQRO60306 1485 aaKnown RBP eCLIP18.6■□□□□ 0.571e-6■■□□□ 12.2
CDC42SE1-206ENST00000492796 ABCA10Q8WWZ4 1543 aa18.58■□□□□ 0.56
CDC42SE1-206ENST00000492796 TRIM41Q8WV44 630 aa18.57■□□□□ 0.56
CDC42SE1-206ENST00000492796 TDRD9Q8NDG6 1382 aaKnown RBP18.55■□□□□ 0.56
CDC42SE1-206ENST00000492796 ABCA5Q8WWZ7 1642 aa18.53■□□□□ 0.56
CDC42SE1-206ENST00000492796 PBRM1Q86U86 1689 aa18.52■□□□□ 0.56
CDC42SE1-206ENST00000492796 GRIN2BQ13224 1484 aa18.51■□□□□ 0.55
CDC42SE1-206ENST00000492796 GAPVD1Q14C86 1478 aa18.5■□□□□ 0.55
CDC42SE1-206ENST00000492796 CHD1O14646 1710 aa18.49■□□□□ 0.55
CDC42SE1-206ENST00000492796 OSCARQ8IYS5 282 aa18.49■□□□□ 0.55
CDC42SE1-206ENST00000492796 MAGI1Q96QZ7 1491 aaPredicted RBP18.48■□□□□ 0.55
CDC42SE1-206ENST00000492796 SNAPC4Q5SXM2 1469 aa18.47■□□□□ 0.55
CDC42SE1-206ENST00000492796 AEBP2Q6ZN18 517 aaPredicted RBP18.47■□□□□ 0.55
CDC42SE1-206ENST00000492796 SYNJ2O15056 1496 aa18.4■□□□□ 0.54
CDC42SE1-206ENST00000492796 CHIC1Q5VXU3 224 aa18.38■□□□□ 0.53
CDC42SE1-206ENST00000492796 ERICH3Q5RHP9 1530 aa18.38■□□□□ 0.53
CDC42SE1-206ENST00000492796 ADAMTS12P58397 1594 aa18.35■□□□□ 0.53
CDC42SE1-206ENST00000492796 FBLN2P98095 1184 aa18.35■□□□□ 0.53
CDC42SE1-206ENST00000492796 CHMP7Q8WUX9 453 aaPredicted RBP18.33■□□□□ 0.52
CDC42SE1-206ENST00000492796 FHAD1B1AJZ9 1412 aa18.29■□□□□ 0.52
CDC42SE1-206ENST00000492796 KIF27Q86VH2 1401 aa18.29■□□□□ 0.52
CDC42SE1-206ENST00000492796 CLASP1Q7Z460 1538 aa18.28■□□□□ 0.52
CDC42SE1-206ENST00000492796 GRIN2AQ12879 1464 aa18.27■□□□□ 0.52
CDC42SE1-206ENST00000492796 RIMBP3CA6NJZ7 1639 aa18.25■□□□□ 0.51
CDC42SE1-206ENST00000492796 RIMBP3BA6NNM3 1639 aa18.25■□□□□ 0.51
CDC42SE1-206ENST00000492796 RIMBP3Q9UFD9 1639 aa18.25■□□□□ 0.51
CDC42SE1-206ENST00000492796 ARHGEF11O15085 1522 aa18.24■□□□□ 0.51
CDC42SE1-206ENST00000492796 CUL7Q14999 1698 aa18.23■□□□□ 0.51
CDC42SE1-206ENST00000492796 NUP160Q12769 1436 aa18.2■□□□□ 0.5
CDC42SE1-206ENST00000492796 CEP170Q5SW79 1584 aa18.18■□□□□ 0.5
CDC42SE1-206ENST00000492796 IGF1RP08069 1367 aa18.17■□□□□ 0.5
CDC42SE1-206ENST00000492796 SHROOM2Q13796 1616 aa18.1■□□□□ 0.49
CDC42SE1-206ENST00000492796 RUSC2Q8N2Y8 1516 aa18.09■□□□□ 0.49
CDC42SE1-206ENST00000492796 ARAP1Q96P48 1450 aa18.08■□□□□ 0.49
CDC42SE1-206ENST00000492796 CARMIL1Q5VZK9 1371 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms